LOC103031615


Basic Information

Item Value
gene id LOC103031615
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3793328 ~ 3796794 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250677.3
TTTTGTGTCTGCGTGCCCTGATTGATTTCACACAGTCTGTAGTGGCCGGCAGGAGCAGCGGATCAGCGGCGGATCTGCGGAGACACGCAGCGGAGCTTCCCGCCTCTCCCCCGggctttctgtctctgtttcagccGCTGATTTTTTTCTCCCGGAGGCGgttctggatctggatctgatTCTGTTTGCTCGGTGCTGCCGCCATAGTGATGCTGCAGACTGAAGGATACTGAAGGATGCTGCTCGcctgtgatgctactctggtCCCCATCTTCTCCCTGAGGACAAGGCCTGAGTGGCTGGGATACAGTGGATTGGTTTGTTGAGATGCTATGCCCTGTCCTGGCTGGTCTACAACACAGCTGCTGATGCTACTGTGGATACTGTGCTAAGTGGTTGTAGCTAGCATCCTCCAGGCTTCCATCAGTTCTAGATGAAAAACAAACCATACCAGCTGAAGTTCACACCACCCTGGGAGAAGGATGTTGGCTTCGGCAGGAGGCACAAGATTTACATGCGAAAACCCGCCAAGATAATAGCCAACCCCGGCGTCGTGATGAAGGTGCTACGCCGCAAAAAGATCTTCATCTTCCTGGCCTACTTTCTGCTGGTGGCTCTGACCATGCTCAATCTGGCCAACTACCGGTGGACCAAGGAACCCCAGCAGTGCAGCCATGAGATGCTGAGCAGCAGGTTCCAGAGCACGCTGGACGTCAGGTTCCTCTTCAAGGATCCGCCGACGAAGCCCAGGCAGCTTGTCTATGTGTTGACCACGTGGCGTTCAGGATCGTCCTTCTTCGGGGAGCTCTTCAATCAAAACCCGGATGTGTTCTTCTTGTATGAACCCATGTGGCACATTTGGCAAAAGCTCTATCCAGGTGACGCCGTTTCGCTCCAGGGAGCATCTCGAGACATGCTGAACTCTCTATACAGGTGTGACTTCTCTGTATTTAGCTTGTACAGCAGTCCTTCAGGCAAGAACATGTCCACGCTTGGTCTTTTTGGCTCCGTCTACAACAAGGTCATTTGCTCCTATCCTCTTTGCTCAGCCTATAGAAAGGAAGTGGTGGGCATGGTGGACGAGAACGTTTGCAAAAAGTGCCCATCCCACAACATCCAAGTCCTGGAAGAACAATGTCTGAAATATGACACCATCGTGATCAAAGGGGTGCGCATTTTGGACATAAACATCCTCGCGCCACTCATGGAGGACCCCTCCCTTAACCTGAAAGTGATCCACCTTGTCCGAGACCCTCGGGCCGTGGCCAACTCCAAAATCAAATCCAAGCACGGCTTGATACGCGAGAACATGCAGGTGGTGCGAAGCCGCGACCCAAAGGCTCGCCACCCGCCGCTGATGGATCCAAACCAGAAGCAAAACCGAAAGGACAGCTCAGACTACCACTCCGTCAGCGCCATGGAGGTGACCTGTGACCACATGTACAAAACCATGAAGACTGCTCTTGACCCTCCCAGCTGGCTTAAAGGGAAGTACATGACGGTGCGCTACGAGGATCTGGTGGACAACCCAGTCAATACCTTGCGCAGTGTACACCATTTCTTGAACATAACGAACAACCGTGACTTAGAAACCTTCGCCATGAACATGACCAGTGGAAACAGCGAAACCTCTCAACCCTTCTTGGTGTCTTCGAGGAATGCCACCAAGGCTGCCAACGCTTGGAGGACAGTGCTCAGCTACCAGCAGATCCGACAGGTGGAGGAGTACTGCAGCCAGGCCATGTCCCTCCTCGGCTACGTGCGGGTTCGTTCTCCAGCCGAGGCCAAAGACCTGAGCAAGTCTTTAATGACGAGACTCAGGGTTTGACGCTCTGGGCGCCACCTGGAAGCCTGGAAGTGCACCACCGTTCGCTGGTATGAGACTATGAACTGGTATGGTTTCTCATGGtttgtgtttattgaaagatgTTTGCGAGAACTGCTGCTACTGGAGCATACGAGACCAAataagacaaacaaaaaaaaagtacgcTGTGTACAGTGTCTTGTTGATCTTTAACCTATGCCAAGACGTTACTCTAGAACGTATACGCTAGCGCTCAACAGTTTACAACAGTTTACAACAGGCAGAGTCAATTTACCAACAGTTACCAACTTCAGAAGAAACGtctttttaaaatctgtttacgAAGTTTGTATGATGTAGGATTCTGGTACAGTAttttacaaatgaacaaacttaacaggataaaatactcaaaaacacatcattttacttggtGCAATTACTCATTTTTATCAGAGAATTGTTGCTGTAGGGACTGTTGCTTCTAAGAAAGATATTTGTGAATGAGCCCCATTGTTTTCGGCAGTGTAAAAGCTGATCGTAAAGTGTTAGTTCTGTGCAACACAGCTTTCATGCAACTGTTAAAACACTGCAAGCTAGTTTCCCAGACTTCTGGTCTAAGATAACCCTAAATCCAAAGGTGTTTCACCATTGGTGCTTTTAGGATGAAATTCTGACATTAGAGATGATTTTAAAATCACTGAGAAAGGTACTAAAATCAGAATCCATTCTTTCAGAAGTAAAGTAATAGAACAATAGACACATGTAAATAGGtcattaaaattgtatttagtctttaattttaataaagccTGTGAAATACATTTTGTTAAATAGGTTGTAGTATTGTACAAATCATCACTGtatataacataaaacaaaaccatTAACATGACACGTTGTTTTAAGCTTTTGAACGCTAGCGTACCTCGTCGTATGAAGGCCGGGGGGTTGATTTACACAGAGTGCTCCATATGTCAGGCTTACTGCTGTGTTTTCTTTAGCCTTGCTTTGAATTTGAAAGCTAGGCCCTTACATCACTGAGGCTTTCAGTCTTTTCAGCCTTAATCCAGAGTTATTATAAGTGTTAAAAGTCTTGACGAATGACATGCGACAGACTGACTCTCATCCTTACGGTACGAGTAACGAGTCAACGAGTAATGATGTTTTATGGAATGTTTTGTACAATGCTGTATTTAAGGATTTGAGGCACAACAACGTGAACTGGTttcattttaatcattattttattgatgaAAGTGCCTTGCTCAGACAGTTTGTGAGCCGTAGGAGAGTTTTAAAAGGGTACTCCACTAAGGGTTTTAATTTTGCTGTATAATTTAATGGTTATGGTGTAATCAAAGTCATTCATGGTGGTATTATAACATTTTGTTGCAGAGAATtgttcacagtggtggtgaatggaGCTGAGAGCTACTTCATAGAAGGTTACCAATAAACATTTGGACAAAAACTATAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250677.3 True 3287 mRNA 0.46 2 3793328 3796794

Neighbor

gene id symbol gene type direction distance location
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding downstream 33346 3722737 ~ 3759982 (-)
usp33 usp33,LOC107708728,LOC107751869 coding downstream 257923 3504576 ~ 3535405 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding downstream 289506 3479968 ~ 3503822 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 377019 3381575 ~ 3416309 (-)
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding downstream 608793 3177666 ~ 3184535 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding upstream 178016 3974810 ~ 3990263 (-)
LOC103021848 LOC103021848,LOC108437503 coding upstream 206031 4002825 ~ 4016139 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 271984 4068778 ~ 4074278 (-)
LOC111194272 LOC108437516,LOC108267691,LOC107715522,LOC107681815,LOC105889505 coding upstream 308760 4105554 ~ 4121993 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 331738 4128532 ~ 4142618 (-)
G138662 NA non-coding downstream 129320 3663776 ~ 3664008 (-)
G138659 NA non-coding downstream 177314 3615793 ~ 3616014 (-)
G138657 NA non-coding downstream 193818 3599263 ~ 3599510 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding downstream 194731 3585184 ~ 3598597 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding downstream 224674 3540971 ~ 3568654 (-)
G138706 NA non-coding upstream 33873 3830667 ~ 3831292 (-)
G138716 NA non-coding upstream 44605 3841399 ~ 3841780 (-)
G138794 NA non-coding upstream 143842 3940636 ~ 3942474 (-)
G138815 NA non-coding upstream 253373 4050167 ~ 4051231 (-)
G138817 dcun1d1,LOC107656862,LOC107568628,LOC107722250,LOC105889496,LOC103032878,LOC107681826,LOC107578399 non-coding upstream 278706 4075500 ~ 4077466 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 617975 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 678642 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 730569 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 1306434 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 2691835 1050532 ~ 1101493 (-)
G138708 NA other upstream 35927 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 50928 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 534077 4330871 ~ 4338197 (-)
G139074 NA other upstream 1479312 5276106 ~ 5276468 (-)
G139105 NA other upstream 1533284 5330078 ~ 5330805 (-)

Expression


Co-expression Network