eif4a2 (eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495)


Basic Information

Item Value
gene id eif4a2
gene name eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4068778 ~ 4074278 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250682.3
AGTCCCGGTTAGATAAATTCGCCGGAGGATCACTCGCTCCTCCTTTCCGAGTGAATGCCTAAGTCGCGAACGGATCATGTCTAGCGGTTCTGCCGATTACAACAGcTCCAGAGATCGAGACCATGGGGGGCCAGAAGGAATGGAGCCTGATGGTATCATCgagAGCAACTGGAATGAGATTACAGACAATTTTGATGATATGAACCTGAAGGAGACTCTTCTCCGTGGGATTTATGCATATGGTTTCGAGAAGCCGTCAGCTATTCAGCAAAGAGCAATTATTCCTTGCATAAAAGgCTACGATGTCATTGCCCAAGCCCAGTCAGGAACTGGCAAAACGGCCACGTTTGCCATCTCCATCCTGCAGCAATTGGAGATTGAGCAGAAAGAGACTCAGGCTCTGGTCCTGGCACCAACCCGAGAGCTCGCTCAGCAGATTCAGAAGGTCATCTTGGCCCTGGGTGACTACATGGGCGCCTCATGTCACGCCTGCATTGGAGGAACCAATGTCCGCAATGAAATGCAGAAACTCCAAGCAGAAGCCCCGCACATTGTTGTGGGGACTCCAGGCCGTGTGTTTGACATGCTGAACAGGAGGTTCCTTTCTCCTAAGTGGATTAAGATGTTTGTCCTGGATGAAGCAGATGAAATGCTGAGTCGTGGATTTAAAGATCAGATTTATGAAATTTTCCAGAAATTAAGCACAAACATTCAGGTTGTGCTGCTTTCGGCCACTATGCCAGCAGAGGTGTTGGATGTGACCACAAAGTTCATGCGGGAACCTGTCCGCATCCTAGTGAAGAAAGAAGAGCTTACCCTGGAGGGTAtcaagcaattctacattaatgTGGAGCGAGAGGAATGGAAATTGGACACACTTTGTGACCTCTATGAGACCCTGACAATCACGCAGGCAGTCATTTTCTTAAACACTAGAAGAAAGGTGGACTGGCTGACTGAGAAGATGCATGCAAGAGACTTCACTGTGTCTGCATTGcatGGAGACATGGACCAGAAAGAGCGAGACATCATTATGAGGGAGTTTAGATCTGGCTCCAGCAGAGTGCTGATTACTACAGATTTGTTGgctCGTGGCATTGATGTGCAACAGGTTTCGCTGGTCATCAATTATGACCTTCCGACAAACCGTGAGAACTATATCCATAGGATTGGCCGTGGTGGACGCTTTGGCAGAAAAGGCGTTGCCATCAACTTCGTTACTGAGGAGGACAAGAGGATTCTTCGAGATATTGAGACCTTTTACAACACGACCGTTGAGGAGATGCCCATGAATGTCGCTGACCTGATTTAAACTCTGGAGATTTTAATGCAGGGATAGCTATTGAATAATCACTTGCATTTGCGCTTATTTTATTGGAAGAATAAGTCGGTCCTCCTCAATGCTGGCTGTGGATCAGACTTGCGAATTCGATTTGATACGTGACGTGACTTTTCTGCGTGGACGGTCGTAGACTCCTTATCGGTCTCCGCTGGTAGTGGAGTTTACAGAACATGGATTCTTTAAATGTATTCTTTATCAGGTATTTTCTCCCTAGTATGTTTAAGATGTACGTGTTAGATGTTCTTCACCGTTTAGTAACCTACTTATGGACTAAAAGATACAAGTGCTGCATCAAGTCTGCCAATTATGTTATGCTAACATATGTGTGCAGTTTAACTTGGTTCACGCTTCCCTTGTCAGTAAAATGAAaggcacttttttttgttgaatgtattaaattaattgtatattgttttaagtactttttctgtgtgtgtgaagtcCTCTTCAAAAGTGGGTCTTTAAACTAAATGTTCCATGTAGTGTTTGGCTCATTTGACAATAAAGAGGATAGTGCTACTCGTCCTTTAACATCTGA

Function

symbol description
eif4a2 Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human EIF4A2 (eukaryotic translation initiation factor 4A2).

NR:

description
PREDICTED: eukaryotic initiation factor 4A-II isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250682.3 True 1880 mRNA 0.45 11 4068778 4074278

Neighbor

gene id symbol gene type direction distance location
LOC103021848 LOC103021848,LOC108437503 coding downstream 52639 4002825 ~ 4016139 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding downstream 78515 3974810 ~ 3990263 (-)
LOC103031615 NA coding downstream 271984 3793328 ~ 3796794 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding downstream 308796 3722737 ~ 3759982 (-)
usp33 usp33,LOC107708728,LOC107751869 coding downstream 533373 3504576 ~ 3535405 (-)
LOC111194272 LOC108437516,LOC108267691,LOC107715522,LOC107681815,LOC105889505 coding upstream 31276 4105554 ~ 4121993 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 54254 4128532 ~ 4142618 (-)
LOC103023384 LOC108437496 coding upstream 106911 4181189 ~ 4225637 (-)
LOC103024655 NA coding upstream 162391 4236669 ~ 4269902 (-)
LOC103024348 NA coding upstream 169188 4243466 ~ 4245836 (-)
G138815 NA non-coding downstream 17547 4050167 ~ 4051231 (-)
G138794 NA non-coding downstream 126304 3940636 ~ 3942474 (-)
G138716 NA non-coding downstream 226998 3841399 ~ 3841780 (-)
G138706 NA non-coding downstream 237486 3830667 ~ 3831292 (-)
G138662 NA non-coding downstream 404770 3663776 ~ 3664008 (-)
G138817 dcun1d1,LOC107656862,LOC107568628,LOC107722250,LOC105889496,LOC103032878,LOC107681826,LOC107578399 non-coding upstream 1222 4075500 ~ 4077466 (-)
G138830 NA non-coding upstream 67190 4141468 ~ 4151135 (-)
G138834 NA non-coding upstream 87934 4162212 ~ 4162480 (-)
G138822 NA non-coding upstream 98701 4172979 ~ 4175596 (-)
G138837 NA non-coding upstream 105546 4179824 ~ 4234182 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 207422 3847722 ~ 3861356 (-)
G138708 NA other downstream 235108 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 893425 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 954092 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 1006019 3050400 ~ 3062759 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 256593 4330871 ~ 4338197 (-)
G139074 NA other upstream 1201828 5276106 ~ 5276468 (-)
G139105 NA other upstream 1255800 5330078 ~ 5330805 (-)
G139489 NA other upstream 1934775 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1948331 6022609 ~ 6054733 (-)

Expression


Co-expression Network