LOC103036885 (LOC103036885,LOC108428857)


Basic Information

Item Value
gene id LOC103036885
gene name LOC103036885,LOC108428857
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4484233 ~ 4485985 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250694.3
ATTCACAGTGTAGATCAGCTACagctgcagagagaaagagagaacgagagagagagatcttatTGCAGGATCATGTGCAGAGGACTGGAATCACTGCCAATCACCTGTCTGGAGAGggCCAAAGAGCTGAAGGCTCGTTTCGGAAGTTTCATCCTCAAACAGGAGTTCAACCTCATGGGTCTCTCAAACAAAGCCGACAAACTGCGGTCGGAAGACGTGCTCAACTGGAGGACGTCCTTTCAGAACCTCCTGGCTCACAAAGATGGCCTGTGTGCTTTCCGAGCGTTCCTGGTGTCCGAGTATAGCGAGGAAAATGTTGCCTTCTATTTGGCCTGTGAGGATTTTAGGACCACAAAGTCGTCCTCCAAGCTGTGCAGCAAGGCCAAGAAGATCTACGAGGAGTTCATTGGGTGTGATGCACCAAGAGAGGTCAACCTCGATCACGAAACCAGAACCATCACCAAGAAGAACCTGGAGCGTCCCACCAGCACCTGCTTTGAGCTGGCTCAGAGTAAGATCTACACCCTGATGGAGAAGGACTGCTACCCTCGCTTCCTCAAGTCTTCGCTCTACCTGGACCTCACCAAACACCTGACGCCCTGAAGGACGACTACCAGGACTGAGCACAGGACATTTCAGAGTTCAGAGGACCTGAACCTCGTACGGCTGGTCTGAACGTCGCTGCGTTCTCCTGCAGCTGAAGCTGAAATTTGAGATGatcagatggatggatggctggaaGATGATGGTGAAATCCAGCTTCCAGCCCGGTCTGGATCAGACTGAAGCTCAGGAGAGACGAGACATATCCTGCTGGAGCTCCGATTTGGAGCAtttacagaagaagaagaagggaaTTATGGGATAAATAGGATTATTCCGTagcacttgaaaaaaaaaaaagacaacagaACTGTTGGGACTCAAACTCGAGGCGCAGAAAGCCTGACTGCCTTTTGCacaagctgtgtgttttttttttcatttttcacttcTACATATTTATTGAAACTTGATATTTATTGAAGAATGTGTTTTGCAGAAGTAgcatatttgatatatttatgACACTGTGATGTACTGCGAAAATTGTAACTTGAATAAATTATGAATTGTTATTTCATGA

Function

NR:

description
regulator of G-protein signaling 16-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250694.3 True 1126 mRNA 0.47 4 4484233 4485985

Neighbor

gene id symbol gene type direction distance location
LOC103026217 nos1apb,LOC108428842 coding downstream 8316 4459769 ~ 4475917 (-)
LOC103025914 NA coding downstream 30864 4435813 ~ 4453369 (-)
xpr1 xpr1,LOC108267842,LOC107593799,LOC107681714,LOC107722139,LOC105029208 coding downstream 51463 4397508 ~ 4432770 (-)
LOC103036275 cdc14aa,LOC108411489 coding downstream 102810 4362073 ~ 4381423 (-)
LOC111194273 NA coding downstream 123936 4349790 ~ 4360297 (-)
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding upstream 44551 4530536 ~ 4545488 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding upstream 237401 4723386 ~ 4727528 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding upstream 253003 4738988 ~ 4748753 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding upstream 275768 4761753 ~ 4767293 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 285808 4771793 ~ 4805667 (-)
G138919 NA non-coding downstream 62638 4420864 ~ 4421595 (-)
G138913 NA non-coding downstream 87301 4396090 ~ 4396932 (-)
G138910 NA non-coding downstream 133107 4332394 ~ 4351126 (-)
G138837 NA non-coding downstream 250051 4179824 ~ 4234182 (-)
G138822 NA non-coding downstream 308637 4172979 ~ 4175596 (-)
G139011 NA non-coding upstream 220228 4706213 ~ 4707525 (-)
LOC111194275 NA non-coding upstream 266588 4752573 ~ 4754327 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding upstream 335218 4821203 ~ 4838073 (-)
G139029 NA non-coding upstream 349797 4835782 ~ 4836531 (-)
G139003 NA non-coding upstream 352881 4838866 ~ 4854692 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 146036 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 622877 3847722 ~ 3861356 (-)
G138708 NA other downstream 650563 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1308880 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1369547 3095601 ~ 3114686 (-)
G139074 NA other upstream 790121 5276106 ~ 5276468 (-)
G139105 NA other upstream 844093 5330078 ~ 5330805 (-)
G139489 NA other upstream 1523068 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1536624 6022609 ~ 6054733 (-)
G139487 NA other upstream 1818984 6304969 ~ 6374709 (-)

Expression


Co-expression Network