XLOC_007227 (CU302200.1)


Basic Information

Item Value
gene id XLOC_007227
gene name CU302200.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 17421668 ~ 17482154 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014270
GAGAACCACTATGTTAATCTAATCATTAGTCATTAGTCAAATCTTCTGTTTTTACAGGGGTTCCAGTGCTTGTGACATGGCAGCAACAGTTCTCAGGTTGCGCGACTATGAAGGCGAGGCCCGGCATTCAGCGGTCGGACTCACAAAAGCCTGCAGGCAAGCGGATAAAGGCTATGTCTAATGAGAGAGGATTCTTCCACTACACTAGCTACCAACCACAGAGGAAAGAAAAAGCTATTATGGATCTTTAAAAGAGTGGAAACTCTGGATAGGTGTGCAGACACAGGGCTCAAAAGGAGTGAGGCACCTCCCTCTGTGACAGACCTTTGGTTCCTTCTCTGGGAACAATAGAAGAACAAGCTTAATCCTTGCCAGCTCATAATGAGCTATAAGCTTTCCTTTCACAGCAAAAATGTCCTTCCTTGCTTTGGTGCTAATCAGGGACAAATGCCCTGGTCCTTTTCAGATCTCGCAAACTTCATTCCTTTGCTGCCGCTCTCTTCTCTTGTCCTGCGTTTTTCAAGTGTCCTAGGTTGAAGATGAGATGGTGTTGAGATCCGTGAGAACGTTTTGGGTCAACGTATAGAAGCTTTGCGTTCAAGAGTCTGCGTTCGCAACTCATCTTTCCAGTTGCAGAAAAACCAAGAGTTTGCTTCTTCCTGCAGTTGGGACAATGAAGCAGGAACATGAGGTTGGAGTTATTCATCAATGTGAAAACAGCCAGGCTTTTTTGGTTGTAGTGCTTGGAGGATTCAGCAGTTAAATGCCTCTGCAGGCTGCAGCCGAGCAGAAAAACAGCCTAGGAAAAACAACAAAGAGCTCAAACCCCATTCACACCGTGAAAGGACGAGCATCAAGACCGCCGATGAGGCATGTAGCACACACAGGCTTTCTTCTTTCCCTGCACCGCACAAGAAGCGAGAGAGGTGTACGAGGAACCTATTAAAGCAAAATGACACGTAATCGGCTTAT
>TCONS_00014271
AATCTTCTGTTTTTACAGGGGTTCCAGTGCTTGTGACATGGCAGCAACAGTTCTCAGAtggaaatccggattcgcttctcttttccttttaataaagatgcggttctagttgctgtggattgtcctgtttcaacagatttgGTTGCGCGACTATGAAGGCGAGGCCCGGCATTCAGCGGTCGGACTCACAAAAGCCTGCAGGCAAGCGGATAAAGGCTATGTCTAATGAGAGAGGATTCTTCCACTACACTAGCTACCAACCACAGAGGAAAGAAAAAGCTATTATGGATCTTTAAAAGAGTGGAAACTCTGGATAGGTGTGCAGACACAGGGCTCAAAAGGAGTGAGGCACCTCCCTCTGTGACAGACCTTTGGTTCCTTCTCTGGGAACAATAGAAGAACAAGCTTAATCCTTGCCAGCTCATAATGAGCTATAAGCTTTCCTTTCACAGCAAAAATGTCCTTCCTTGCTTTGGTGCTAATCAGGGACAAATGCCCTGGTCCTTTTCAGATCTCGCAAACTTCATTCCTTTGCTGCCGCTCTCTTCTCTTGTCCTGCGTTTTTCAAGTGTCCTAGGTTGAAGATGAGATGGTGTTGAGATCCGTGAGAACGTTTTGGGTCAACGTATAGAAGCTTTGCGTTCAAGAGTCTGCGTTCGCAACTCATCTTTCCAGTTGCAGAAAAACCAAGAGTTTGCTTCTTCCTGCAGTTGGGACAATGAAGCAGGAACATGAGGTTGGAGTTATTCATCAATGTGAAAACAGCCAGGCTTTTTTGGTTGTAGTGCTTGGAGGATTCAGCAGTTAAATGCCTCTGCAGGCTGCAGCCGAGCAGAAAAACAGCCTAGGAAAAACAACAAAGAGCTCAAACCCCATTCACACCGTGAAAGGACGAGCATCAAGACCGCCGATGAGGCATGTAGCACACACAGGCTTTCTTCTTTCCCTGCACCGCACAAGAAGCGAGAGAGGTGTACGAGGAACCTATTAAAGCAAAATGACACGTAATCGGCTTATGGAGCCAGGCAAAATGAAGAGTTCTGAGGCCCAAACCTCGCATTACAGTTCAGCTCCCAGTGGTGCTTCCAGATAACTCCAGGGGGCTACAGAAAACATTCATTTCAGTGATGAAGGATCTACAAACTGCTACAAATTAATACGCCATCTAACTATGGGGAAGTTTTATGCCAAACAGCATGACAAGACACACAAAACAACCCAAAACAGACATTTAGGCCATGTCTACACTAATCTGGAGTCTTTTCTCCTAAAATGCTTTCCGTCTGTACTACCTTTTTCAAGCATTTGTAAAAAGTTGCTTAACCACGTTTAAATGACTTGCACATGAGTAAAACACAACGTGCCCTGACCTGTTTGCACAGTCCAAACAACATGAAAACTGGGTTTTTA

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0030163 protein catabolic process biological_process
GO:0048871 multicellular organismal homeostasis biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0001895 retina homeostasis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099883

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014270 False 972 lncRNA 0.46 2 17421668 17481761
TCONS_00014271 True 1410 lncRNA 0.45 3 17421707 17482154

Neighbor

gene id symbol gene type direction distance location
XLOC_007226 rnf212 coding upstream 4938 17397534 ~ 17416730 (+)
XLOC_007225 si:ch211-255i20.3 coding upstream 28073 17382803 ~ 17393595 (+)
XLOC_007224 spon2b coding upstream 39134 17376940 ~ 17382534 (+)
XLOC_007223 wfs1b coding upstream 70509 17329895 ~ 17351159 (+)
XLOC_007222 rtn4rl2b coding upstream 220794 17197132 ~ 17200874 (+)
XLOC_007228 NA coding downstream 485799 17967953 ~ 17992665 (+)
XLOC_007229 NA coding downstream 809128 18291282 ~ 18296119 (+)
XLOC_007230 NA coding downstream 1026474 18508628 ~ 18531555 (+)
XLOC_007231 si:ch211-111e20.1 coding downstream 1298928 18781082 ~ 18789781 (+)
XLOC_007232 CT573252.1 coding downstream 1317280 18799434 ~ 18799558 (+)
XLOC_007217 NA non-coding upstream 1112137 16306620 ~ 16309531 (+)
XLOC_007215 NA non-coding upstream 1200218 16217965 ~ 16221450 (+)
XLOC_007211 NA non-coding upstream 1352135 16068357 ~ 16069533 (+)
XLOC_007207 NA non-coding upstream 1675250 15739983 ~ 15746418 (+)
XLOC_007201 NA non-coding upstream 2056890 15361410 ~ 15364778 (+)
XLOC_007233 NA non-coding downstream 1509999 18992153 ~ 19000316 (+)

Expression


Co-expression Network