LOC103021848 (LOC103021848,LOC108437503)


Basic Information

Item Value
gene id LOC103021848
gene name LOC103021848,LOC108437503
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4002825 ~ 4016139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606174.2
TCCAATGGAGAACTGGAGCAGCTTGTCCAACCCTGAACCCTGAGACAGGGGTCTCCAGCTAAAAACGACCTCAACAGCCAAGGCTTTTTAACAAATTAAGGTCTTTCCGGAACTCTTTTCGGAGCTCCTCTCAGTGCGGGACACCAGCCAAGATGTTCTTTGTAACGGGGAGAAAAGTTCCTGGTCCTGTTAATGAGAAAAGGAGTATCTATCAGAGGTTCTTGGGCTATGAGCTGATGGACAAGAAGCGGACAGAGACGGCACTGAAGGCTGGAGAAGACAGAGCGATACTGCTGGGTCTCAGCATGGTCTTGTGCTCCATCATGATGTACTTTGTGCTCTGCATCACCATGGTGCGCTCCTACACTGACAGTGTGTGGACCGAGGAGAGCATCTGCACTATACTCAACTCCTCCCTGACAATGGAGATCAACTGCTCTTACAGCTGTGGTCCAGACTGCTGGAGAAGCTCCAAGTACCCCTGCCTGCAGGTCTACGTCAGCATCAACGCCACCGGCCGCGTAGGACTGCTGTCCCACAATGAGGAGACGCAAGACATCAGTTCAGAGTGCTTCTATGTCCCAAAGTGTCAGAAGGACCACGTGGCAGTTCAGGCCATGATGGTGAACATCTCGGAGAAGCTGAAGGCTCAGCAGCAGGTCAGGTGTTTTTACGATCCCGCCGAGCAGCAGAGCAGCATCCTCCTGAGCCGACTCTACGGCACCAGCGCCATCTTCCACTCCCTGTTCTGGCCTTCCTGCATGCTGGCCGGAGGAAGCCTCATCATCTTCATGGTCAAACTCACCCAGTACCTCTCCATACTGTGCGAGCACATCAGCAAGATGCCCAAGGGACTCAACTCAACATGCTGAGTCTGATAAATCCTCAGAGACTGGGAACTGGAACGGTGGAGTAGACAAGACAACCAGACCAGCCGTT

Function

NR:

description
calcium-activated potassium channel subunit beta-2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04938 KCNMB2; potassium large conductance calcium-activated channel subfamily M beta member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606174.2 True 939 mRNA 0.53 5 4002825 4016139

Neighbor

gene id symbol gene type direction distance location
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding downstream 12562 3974810 ~ 3990263 (-)
LOC103031615 NA coding downstream 206031 3793328 ~ 3796794 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding downstream 242843 3722737 ~ 3759982 (-)
usp33 usp33,LOC107708728,LOC107751869 coding downstream 467420 3504576 ~ 3535405 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding downstream 499003 3479968 ~ 3503822 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 52639 4068778 ~ 4074278 (-)
LOC111194272 LOC108437516,LOC108267691,LOC107715522,LOC107681815,LOC105889505 coding upstream 89415 4105554 ~ 4121993 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 112393 4128532 ~ 4142618 (-)
LOC103023384 LOC108437496 coding upstream 165050 4181189 ~ 4225637 (-)
LOC103024655 NA coding upstream 220530 4236669 ~ 4269902 (-)
G138794 NA non-coding downstream 60351 3940636 ~ 3942474 (-)
G138716 NA non-coding downstream 161045 3841399 ~ 3841780 (-)
G138706 NA non-coding downstream 171533 3830667 ~ 3831292 (-)
G138662 NA non-coding downstream 338817 3663776 ~ 3664008 (-)
G138659 NA non-coding downstream 386811 3615793 ~ 3616014 (-)
G138815 NA non-coding upstream 34028 4050167 ~ 4051231 (-)
G138817 dcun1d1,LOC107656862,LOC107568628,LOC107722250,LOC105889496,LOC103032878,LOC107681826,LOC107578399 non-coding upstream 59361 4075500 ~ 4077466 (-)
G138830 NA non-coding upstream 125329 4141468 ~ 4151135 (-)
G138834 NA non-coding upstream 146073 4162212 ~ 4162480 (-)
G138822 NA non-coding upstream 156840 4172979 ~ 4175596 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 141469 3847722 ~ 3861356 (-)
G138708 NA other downstream 169155 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 827472 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 888139 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 940066 3050400 ~ 3062759 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 314732 4330871 ~ 4338197 (-)
G139074 NA other upstream 1259967 5276106 ~ 5276468 (-)
G139105 NA other upstream 1313939 5330078 ~ 5330805 (-)
G139489 NA other upstream 1992914 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 2006470 6022609 ~ 6054733 (-)

Expression


Co-expression Network