LOC103023384 (LOC108437496)


Basic Information

Item Value
gene id LOC103023384
gene name LOC108437496
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4181189 ~ 4225637 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677696.1
CAACATCATGAAGACTGAAGACCCTCTGAAGAAGCACCTAATGGAGTCATTGCCACATGACATCATCAGCAAAGACTTTGAGGCCGAACCATGGAAGTATTCTTCATATATGGACTTTACGATGGATGCTGGACCAGCCATCGCCAACATGGAAGGAGCCTTGGTTACTCACCTGCATCCTTTCTGCCACGTTCTGCAATGGCCAATGTGACAGTTCACGTCTTGGGCAGATCCTTTAATGTTTTAGAGGTCGCACTGAGGATGGAAAATGCAGAGTCTTTACTCTGGAGAACGTTTGGAGAAGGCCATCGTTCTTCTCCAGTTGATAACTCTGACACTCAAACAGAATCTACATCACATACATCACATGGGAAGAAAAGGAACAAGAGAAATGAGAAAACTGCTTCAGATCAGAAGGAAAGGGTGATTCAGAATGATGACTGCACGTCCAGCAAGTCGAGTCTTCTTAAAGCTAAGTTCACAGGGCAGAAGGAAAGACAGAGTGATTTCCGATGCTGGATTAGTGTGAAGATGTTTGGAACTGACCTTACCTTCATGACCTGCAATGAACTGCTTGGCCAACTGAGAGAGCTGTCACTCAGAATGGCTGGAGTCACTGTGAAGCTGCTGCAGGGTCAGGAGGTTAAATTGACCCACAGAACCATCATGATTGCTGAAGAACTGGTGTTACCATCACTTTCAGGCTTGCCCATCAAACTGAGTATCAACATGTCCTcttcttactctctctgggtgaagGGGAGCGCCAACCTTAAGGACTGGTCTCAGTTCTCATTGGCAGGTCACATAAAGCCAAATGCATTTATCGGCCTCTCAGCCAGAATGGGGGTGGATGGAGCATTTGGTCGAGTGGGACTGGAGTGGGTCACCCAAGTCAGAACCTCCACAAGCTTGGATGGAGGAGTATATGTGCACAATGGGCAAAGTTTAAAGATGGTTCTCAACACGCCTGAAGATGTTATGGATGTTTTGTCCTTTAGCTCAAGAATGTATCGTGTGAGTGGAGAAAGCAAAGAGGAGCTCACCGCCTTGAGGAACCTGAAAGAGAAGACCACCTGCACACCTAAAACATTGTCCAAGTTGGTTGGATGGCAGCTGTGCTCTGATGTCACCTACCCTGTGTCACTGATAGGAAGAGGTTTTCCACCGGCTGGTCCAGTACTCTTTACACTGAGGTTTCAAAAGCTGGACCGAGGCCTTCAGAAGTACCTCTTAGAGGCCGCTTATGCATTCACTTCTCAGAAAAACTCCTGGATGCCGCTGGAAGCCAATCTGCTCATCTTCCTTGGAACACCTCAGTCCACTATCCCTCGAGACGTATCTTTGGACCTGAGTTTTAGTCCTCGAAGGCTGGTTCTGAAAATCGTCCACCCTCTAAAAACCCTCCTCATTCAAGGGCTACTTGACGAACTGAATGGACACTGGTCAGGAAGAGCAGAGGTTCTAGTAGATGACATCTACCATTATTATCTCAAGGGACTGATTGAGACTGTGAGTCTTCCCTCAGAGAAGAGAACACACTACCAACTGGAGGCCAAAGTTGCAGCAGATGGACGTCCGGTCATACTTTCAGTTAACGTAACACATGGGCTGAGCAGGAAGATTAGCGTAACTGCTAAGCTTCGAAATGTCTTCAGTAGAGATGCTTCTTTTTCAGTGCAGCTGGAGCGGAGGCAGGATGATGGTCGGAGGCAGTACTCTGTGGACACAGGGCTTCTGCTGCCCAGCTTGTTAAGCACCAGAATACTCGGACTGGTTGAGCAGAGTGGAGCAGAGTGGAGCTCCGGCCTACGGATCAGATACGGGGTGCCAGATTCACCCATTATGCACGAGTGTCACATGTCACAGAACCTGAAGGACGAGGTTGAGTCAGTTGAAGAGGGCTACAGCATGAGGGTGGATCATGAGCTCCAGTGCTCCCAGATCACCCTTTTCAACCACAAGATTCAGCTCAGACATGAAAGGAGTCCAGTTCATATCCAGTCTTCACTGGACCTGAGCTACGGCAAGCAATGGAACCAGGGCAGCAACAAACAAAGAGTCTTACTGAGTCAGTCCATCAGGAACCAGTCTGGAGAGAGTCTCACTAGCTACGCGCTTGAGTTCAGCCTGCGAGTTCCAGAGAAAGGACTGAACTACAGGACCCAGCTCCTACACTCCCACATGAAAAGAAGAAAATCTGAGAGCAGCACCCACCTGAAGGTCAATTATAACGACCAGATTCCCCTGGTGGCTGGCCTTCACTGGAAAGACATGTCTGCAAAAGCCTCATTACGCAAATGGGACGGGTCGTTCAACATGGACACACCGTGGGTGTATGTCTACTGGGCTCATAAGCTAACTCAGCCTCAACACGGCACAACCCAGTTCACTTCTGAGATAACCACCCGCAAGTTGGTGACCATTCGCAACTTGGCGCTGGAGGGTCTTTACAGGGAGAAGAACAGAGACCGGGAAGGACACCTCCATCTGTTCACACCTACGGTCACCTATCTAAAGGTTGGCGGATGGGGTGCTCTGGGAAAGCGTAGAGTTAATGCTTCATGCTCCATCAGCACAGCCTGGACACCAGCCATAAAAGGGGAGATTTCGTTGAACAATGGAAAACAAGTGAAGTCTCTGGATTTGAGCAGCAGCTACGGCAAGCTGAACCACAAGATCTCTGCAACCCTCAACATTGTGGAAAAGAAGCTGAAGAAGAATGaggtgatgatgaggatgacCTTCTCAGAGATGAACAGTCCGTATCTAGAGATAGAGATAAGTGGCAAAGTGGAAGAAATGAGGAAGGACAGAAATCTGTATCAAAAACGATGGGTGCTTCACTTCAGGCAGCCGTTTAAGTTCCTCCCTGAAAGTTTACTCCTTCAGGAGACCTTCACTGTTGACCTGCATAAGGGAGTGTACATCCTTGAGTCCAAATCCCTTCTTCAAAACAACCGAAAAGCCATTCATGTTCTCACCCTGGGATATCGACCCCAGAACCCTTTTgTGTGTTCCTCTTTAATTCATTCTTTATATCTTGAGAATATTCCACATGACTCTGAGATTTGCATCAGCGTCCACAGCAATCAGACTGTGCAGGAGCTGCAGGGGAGAATTTTAACAGCTAAAACGGAGAAGTTAGTAGTGCTTGGGCAGGTCCAACTTCACGGTGAACAAGGGATCACCATCAAAGCCAACCTGAGTCAGTTGCTGCAGCTGAAGTTTCCCTCCACCATGAGCCTAGATGTGGACTTGCTGAGAAATCACAACAGCAGCGTGGACTTTGCATACACCGCGAAAGGGAAATTGACCACTGATGCTAAGAGatattataatGCATATTTATCAGCAGAGAGATCTCCTGCTGGATATATCAGCAGCTCTGTGTATTTGGAGTCTAATGGAAAGAAGATTGCTACACTGGATTCTTCGCTAGCTAACATTTTGGAAATGGATCTTCgtggtgttggttttaatgTAAGCTTTGAGCAAACTCTACTTCCAGAGCTCACTGCTGACGGTCTACTTCGTCTCGGTGCAAATTTATCCTCAGAcagGCTGTCTGTTCTGTGGGCTctgggaaagaaaaagaggatgaTCCAGGCGCAGCTGAGTGCAGCTTTAATACGAAACCCCAACCTTCACCTGAGCTTTTCAGGGGACCTGATTATCCCAATGAACAGCTACACCATCCTCCCACAGGTTTCCAGCCTAGCAGGACTTTTAAATAAGTCCAACGATCTCACTGAGGGGCAGTTGACAGTATCAGTGGACAGTGGTGTGTATGGTGTAAAGCTGAGACACAGTCATGAGGACACCGGATGTGAAGATAAGATGAGCGAGTGTGAAAGTGCCCGGCTGTGTGTGCTGGCTGAGGAGCGTTCTCTCTGCATGAACATCAGCACCAGCTTCATACAGCACGGTCAGCGGGGTCTTCAGGCTCAGCTCCATCACTCCTTCCCTTGGCTGCTTTCTGCAGCAGGGCTGCCTTTCAACAGCACTGCAGGAGTGTTTGTGAACCGGAGTGAGGATGGGCTGCTGACTGAAGTGGAACTGCATGCTGGGTTCAAAGAGCTAAAGATCAGACTTCAGAGAGGCGTGCACAACTCTACTGGGACCACTGGACATTTACTGGTGAACTTCACAGGGGAGTCGAGCCAAGACCACCTGCGGGGCGTCTGCTACACACAGGCTCTGGATCAGACGCTGCTGGTCAACATATGGGTCAACCTCAATGATTCCACTGGTTTTGAACTAGAGAAACCAGACACGTCCTCACTGTCACTTGAGATCCAGGGCCACCACCTATCTTCCAGcACCGGGCTAAAGGTGAACGTTTCCCACAACATCTCTTCTTTAAAACCCTACATACCGTTTGTGTTCCACGCTAAGTCTCAGCTGAACCATTCATCCTCTTCACTTGAGGCAGCAGCAGAGTTACTGGTGGGAAGTAGTCTGATGTGTTTTGAGGGGCAGGTGGGCTACACGAAGCTTGGATTCAAGCAGGTATTGGACGTCTACCACGCTTTCCCACAGCTGGCCTCATTTCCCAGCACTGTTTTAGTACACACTGTGTACGCTGGGCAAAACGACTCACACGTTCTGAAACACCAAACACAGTGGATGCATCAAGACTCAGCTGGACcagcagaaaaaacaggagCTTCAGATGAACCTGGCTCTCAGAAGCATGGATGGGGGTTAGAGCTGAGGCTGGAGAGGAAACCTCATAGCAGACGGGCGGATGTGCTTGTTGATTGGACGATGAgtggacagcagcagcagaatgaGAGCAAGGATGGACACTCACCAGTGATCAGAGCTTCAGGATCTTGGAATGATGTGGGTAAAGAGATTGAAGCCACactggagctccagcagcttttCACACCCACTCTGTCCAAcatccatatacacacactctcacacagccTGGATCACGGACACGGCAGCAACAACCAGGTCCATCTGTCCTGGGACCGAGGGACCCCTCTGAATGTCACTGTGACTGTGAGTCAGCAGCACTGGAGGCAGGAGTCCAGCAGGGGGCAGGCCTGCCTCTACATCTCACCTGGACAGATGCAGTCTGTGCTCCCTCTGCCGAACGCTCGAGGATGCGTCTCAGTGTCTCAGGAGGGACAATCTTCCTACTCACAGAGTGCTGAGCTCAAGTGGAGTGACAAGAGGATCACACAGAGCCTAAAATACCAGAGAGGATCCAGAGGGATGCACACTGTCCAGGTGGAGGCAGGGCTCCAGAATGTCTCTCCCAGCCCATGCCCCTCCCACTCGCTGGTGGCCCAGATGCACACAAATCTCAGGGACGTACTGGAGCACCATGTCCTTCTGGGGCTGTGTCCTTCACAACCTGGAGTATCTTGGTCTGGATCTCACCGGGTGAACTCAGGGAAGGACGTGCTGTACAGCCGGACCggtctgtctctgtctggtcAGGCCGTGCAGCACAGCACCTTCATCCTGGCTCTCAGGAACGCCAGCAGCAGCCAACGCAGCAACTACTCCCTGCTCACTGAGGGAGTATCTTGGTCTGGATCTCACCGGGTGAACTCAGGGAAGGACGTGCTGTACAGCCGGACCggtctgtctctgtctggtcAGGCCGTGCAGCACAGCACCTTCATCCTGGCTCTCAGGAACGCCAGCAGCAGCCAACGCAGCAACTACTCCCTGCTCACTGAGTGGAAGTTGGGGAACTGGAGCATTGAGTTGGGAGGCAGTGGACATTCATCAGTCAGGAGCACAGGCCTGCAGGTTCAGGCCAAACTGGACCGTTCTGAGCTCTTCTGGCTGCAGACCATGATGGGTAAACGCTGCTTACAGGCTGCTGTTGGATACAATGGAGACTTGTCTGACAACCTCCGAACGTCCCTTTGTATGGATGGACGCCACTGGCTGACCTTCAAGGCCCAAAGGGAAGGAAGTGGCATTGAGAATGAGACTCTTGCACTCGTCTCTATGGgtacagccaatcagagccttATGTTCCAGGCCAGGGGTTGTGAGGAGTGCTTACAGGGAACAGAGGCACGGCTCCAGCAGCTGGGGTCACACGTAAAGAGGAAACTGCTGGacagagttcagagactgcATCATCTTCTGCTGGAGTTCAGGAGACAGGCTGGAGGCAGTGCAGCCTTGCAGGAGTTGAGTGACTGGCCACTGAGACTGACCCAGAAGGCTGAGAAACTGCTGTTGCAGAGGGTGGCCTTGCCGTGGACCGTGTGGACCAACGGACCTCTACGCCATGCCCTGAAACACAGCCTGCCACAAACTCTGCACTTCTTACATCATACCTCTCAGCTCATCCAGCAGGAGCTCAGAAAGCCCCTGACCACCCTGGCAGAGGCTTATTACGACGTGACGGGCGAGCGTGTGGACGCAGCGTGGCAGGAGGGACTGGAACTGTGGCGCAGGGAGCTGGAGGAGCTCCTGCCCGCCATCCTACACAATCACCACCTGAGAACACCATCCCTGAGCGTTCTCCGCACCACGATCGCCGCACTGGACCTGGTCAGCCAGCAGACAGTCCACTGGGCCGAGGCCAGGTTGGCTGCAGTTTTGGTGGGAGTGAGGAGGCAACTGGCCTACACATACAAGTTCTCGGAAAGCAGGGAGATGAGAGAAGTGACACTGAGGCTTCCTCTGCCTCAGACTCCCTGGGTAAAAGGCTCACCGGGGTCCGGGGTGGTCCAGGTTCTTCTGGAAGAGTTCCTGCTGAAGCCCCTCCTATCTCTAAACTCAGCCAGCCTCACAGCTGAGCTCTACAGGCTCAAGAGGAGAGTGATGGACAGTCCATTCAACCATCAAGCGTTCCTGGTAGCAGATGAATTTGCTGTATCGTTTGAAGGACAGCTGTTGGAACTTCCAGCTTCCTGTGATCTTCTACTAGCAGTCGACGTGATCAGCAACACTTTCTCCATCACTCTGAAGTCTAATAAACCAAAACAGCACTCTCTAGTGGTTCAACTGAACAACAACACCACCATCACAATCCATCCTCATGCACAGGTGGAGGTCAACTGTCGGACCATTCATGCCCCCTTCACCAACCCTGATGCTACTATAACGAGGGAGCTAAATTTGCTCACTGTGTCCAATAGAAGAGGACTGTTGGTGTCATGTGACCCCtctctgagcatgtgcagtgtAACTCTGGATGGATGGCTACATGGGATAGCCAGTGGACTACTTGGCACCAATGACAACGAAGCAGGAAATGAACATCCTCTGCTGGATGGCTCCCAGACCGAGAGCCTGGAAGAATTCACTCTGGACTGGCAGGTGGATTCTAGCTGCATCAGTAGCAGAGAAAAGACCTGCCAGAACCAGACCCCGGTAGAATCCTGCACActtctcttctcctccaccacatCCCCCCTGAGCTCCTGCTTCAGAGTGGTGGACCCTGATCAGTTCCTCGCAGTGTGTGAAAGGAGTCAGTGCAGCACTCCAGATTCATCCAGAAGTACTTTATGCAGGCTGGCTTCAGCCTACATTCAACTCTGCATTAGAAACTATGTTCCTTTAGAGTCGCCCATTCAATGTGcaTAACGAAGCCTGAGATGCTGATCCTGGCCAACACGAGTACAGCATGAATCACATTTACATGTTTGatacattaaaaattaattggacggaga

Function

NR:

description
PREDICTED: uncharacterized protein LOC108437496

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677696.1 True 7667 mRNA 0.51 51 4181189 4225637

Neighbor

gene id symbol gene type direction distance location
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 38571 4128532 ~ 4142618 (-)
LOC111194272 LOC108437516,LOC108267691,LOC107715522,LOC107681815,LOC105889505 coding downstream 59196 4105554 ~ 4121993 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding downstream 106911 4068778 ~ 4074278 (-)
LOC103021848 LOC103021848,LOC108437503 coding downstream 165050 4002825 ~ 4016139 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding downstream 190926 3974810 ~ 3990263 (-)
LOC103024655 NA coding upstream 11032 4236669 ~ 4269902 (-)
LOC103024348 NA coding upstream 17829 4243466 ~ 4245836 (-)
LOC103024967 LOC108437498 coding upstream 55890 4281527 ~ 4289548 (-)
LOC103025293 NA coding upstream 64775 4290412 ~ 4304086 (-)
LOC111194273 NA coding upstream 124153 4349790 ~ 4360297 (-)
G138822 NA non-coding downstream 5593 4172979 ~ 4175596 (-)
G138834 NA non-coding downstream 18709 4162212 ~ 4162480 (-)
G138830 NA non-coding downstream 30054 4141468 ~ 4151135 (-)
G138817 dcun1d1,LOC107656862,LOC107568628,LOC107722250,LOC105889496,LOC103032878,LOC107681826,LOC107578399 non-coding downstream 103723 4075500 ~ 4077466 (-)
G138815 NA non-coding downstream 129958 4050167 ~ 4051231 (-)
G138910 NA non-coding upstream 106757 4332394 ~ 4351126 (-)
G138913 NA non-coding upstream 170453 4396090 ~ 4396932 (-)
G138919 NA non-coding upstream 195227 4420864 ~ 4421595 (-)
G139011 NA non-coding upstream 480576 4706213 ~ 4707525 (-)
LOC111194275 NA non-coding upstream 526936 4752573 ~ 4754327 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 319833 3847722 ~ 3861356 (-)
G138708 NA other downstream 347519 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1005836 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1066503 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 1118430 3050400 ~ 3062759 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 105234 4330871 ~ 4338197 (-)
G139074 NA other upstream 1050469 5276106 ~ 5276468 (-)
G139105 NA other upstream 1104441 5330078 ~ 5330805 (-)
G139489 NA other upstream 1783416 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1796972 6022609 ~ 6054733 (-)

Expression


Co-expression Network