LOC103023075 (kcnt2)


Basic Information

Item Value
gene id LOC103023075
gene name kcnt2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1652474 ~ 1681323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677767.1
TGAGCGCTGTGGGAGAAGCTGCTGCTCTTCAGGAGAAGATGGTTGATGGAGAGAGTGAGGTGCCGCCCCTGCCTCCCCGGTTCAGGTTCAGGGATCTGCTGCAGGGGGATCAGACCTGGCTGAACGATGACAAGGTGCAAGTTGAATTCTACACCAATGAGAACACTTTAAAAGAACGACTCATGCTGTTCTTCATCAAAAATCAAAGATCAAgtCTCCGAATACGTTTCTGCCACTTCTCGCTGAAGCTGCTCAGCtgtgttttgtatatatttcgAGTGCTGACGGACCCGGAGTGTGCCCTCAAGGCGCCAGAACGCATAAAcctGAATTGTTCTCAGTATAATTACACCCATAATTACACCCTGTTTGAAATAGACTGGACTCCAATCATTTGGGTGGATCGTAGTTTCGCCCTGTGGGCTCTACAGGCGTTCGTAGCGATcgtatgtctgtgtgaaacgaCTCTGCTGACGTATTTAAGCTACAAGGGGAATATCAGGGAGCAGATCTTTCGAGTGACTTTTATTCTGGAGATCATCAACACCGTGCCCTTTCTGATAACAGTTTTCTATTTTCCCCTCCGGAAAATGTTCATCCCTCTGTTCCTCAACTGCTGGTTGGCTAAACACACGCTGGAGAATATGATTAATGATTTTCATCGAGCGATACAGAGGACACACTCGGCCATGTTTAATCAGGTCCTGATCATGATCTCCACACTCCTGTGTCTCATTTTCACGTGTATATGTGGGATTCAGCATCTGGAGCGCGCCGGGAAGCAGCTGAGCCTCTTCGACTCGGTCTACTTCTGCATCGTCACCTTCTCCACCGTGGGCTACGGAGACATCTACCCAATCATCTGGCCCTCCAAGCTGCTAGTGGTCATAATGATATGTGTGGTTCTTCTGGTGCTGCCGATCCAGTTTGAGCAGTTGGCGTATCTGTGGATGGAGCGTCAGAAGACCGGAGGGAACTACAGTCGACACCGGGCCAAGACGGAGAAGCATGTGGTGCTGTGCGTGAGCTCAATCACAATCGACCTGCTGATGGACTTCCTCAACGAGTTCTATGCCCACCCCAAACTGCAGGACTACTACGTCATCATCCTGTGTCCTGCAGAGATGGATGCTCCAGTGCGTCGGGTCTTGCAGATCCCGCTCTGGTCTCAGAGGGTCATCTACCTCCAGGGCTCCGCCCTCAAAGACCAGGACCTCTTCAGGGCCAAgcTGGATAATGCAGAAGGATGCTTTATCCTGAGCAGTCGCTGTGAAGTTGACCGTACTGCAGCTGATCACCAGACGATTCTCCGTGCTTGGGCAGTGAAGGATTTCGCTCCAGGATGTCCTATTTATGTGCAAATCCTCAAACCAGAGAACAAGTTTCATGTGAAGTTTGCAGATCATGTGGTCTGTGAAGAGGAGTTTAAATATGCTCTCCTGGCTCTGAACTGCATCTGCCCCGCCACCTCCACCCTCATCACCCTGCTAGTGCACACCTCCCAGGGCCTGGAGGGACAGCAGTCTCCTGAGGAGTGGCACAGGATCTACGGCAGATGTTCCGGTAACGAGGTGTACAACATCGTCCTGAAAGACAGCATCTTCTTCACCGAGTACGAGGGAAAGAGCTTCACTTATGCCTCCTTCCACGCGCAGAAGAAGTATGGCATTTGTCTGATTGGAGTTTGCCGTGGAGAGAGTAAAACCATCCTCCTGAACCCGGGCCGTCAGTACACCATGAACGCTTCAGACACCTGCTTCTACATCAGCATCACCAAGGAGGAGAACTCCACCTTCAAGTTCCACAGAGAATGCAGCAAGAAAAACTCCAAATCCAACCTTCCAGTGCAGCACATGCTGGCCAGCATGGgcacCGTGGCCATTGACCTGCAGGACACCAGTGCCCCTGTGAGTCGTAGCTCCACCCTGTCTGTTCCAGCCGACCCTTTAAAACCCAACAGCAAGAGACCCAGCATCGGCCCGGTTCTGGAGGTTCCAGTGTCCCCCCTCCTGAATGGTGGGGAAAGCGACCAGTCTGAAGATGATGTGTCCTGCTGGGGGGATCAGTCTAATGACGGATATATCATGGGATATCCTCCTAACCTGCCCTACATTGGAAGCTCTCAGACGTTTTGCCATTTGTTGAAAGAGAAAATGCCTTATTGCTGTCTTCGACTAGAGAAGaagtgTCGACACAACCAATGTGAGGATGCCAAAGCGTACAGCTTCTGGAACAAGCCCATCATAGTATCAGCAGAGACGGCAGGAAACGGCCTGTACAACTTCATCCTGCCCTTACGAGCCTCCTACAGACCCAGGAAGGAGCTGAAGCCCATCATCCTGCTTCTGGACAACCTACCTGACGTACAATTTCTTGAGACCATCTGTTGGTTCCCAATGGTGTACTACATGGTTGGATCATTGGACAGTCTAGACGACCTGCTGCGCTGTGGTGTCTCGCTCGCCGctaacatggtggtggtggataAGGAGAGCACCATGAGCGCTGAGGAGGACTATATGGCAGACGCCAAAACCATAGTCAACGTGCAAACCCTCTTCAGGTTGTTCTCCAGTCTCAACATCATCACTGAACTCACACATCCAGCCAACATGAGGTTCATGCAGTTCAGGGCTAAAGACCGTTACTCGCAGGGCCTCTCTAAACTGGAGAAGAAGGAGAAGATGAAGGGATCGAATCTGGCCTTCATGTTTCGTCTGCCGTTCGCAGCAGGAAGGGTGTTCAGCATCGGCATGCTCGATACTCTACTCTACCAgTCGTTTGTGAAGGACTATGTGATCGCCATCACCAGACTGTTGCTCGGCCTGGACACGACCCCGGGCTCTGGCTTCCTCTGTGCTATGGAAATCACGGAGGACGATCTGTGGTTACAGACGTACGGCAGACTGTACCAAAAACTCTGCTCCACGGTGGGAGATATTCCAATCGGCATCTACAGAACCGAGTTCCAGATGAACGAATCTCTCGAGCTCTCGCAGTCGCAGCTGTCTGTAAATATGGACGACCTCGAGGAGGTGAAGGAGCAGCGAGACGGATCTCAGAATTTCCGAACCTCAGAGTCTTCAGACAGTAAGCAGCCGCTGCTGCTGAGGAGGAAGAGCCTGCAGTGGACGCGCTACCTCAGCCGTAAGAGCCCCCGGCAGGGGCCCGGGGCCGAGAGGGGCTTTCGGCAGCGGTGCGGCCGCCTCCCTCGCTCCGAACGGCAAGAGCTGGCCGAGCTGGTGAAGAAGCGCATGCAGAACCTCGGCCTGAGCTCCACAGGATACGACGACATGAACGACAGCCACAGCTTCCACTCGTACGTCTTGATCAACCCTCCCCCAGACACCAGACTGGAGCTTCACGACACCGTgtACATCATACGTGAGGACCCGTTCTCGTTTGATTCGAAGGATGTGGACAGCAGGAAGAGCAGTGTGGGGAACACGTCGTGGACAGGAGACAGCCAACAGCTGGAGAGTCAAGTCTGATTCCCATTTCTGGAGCAGTTCCTTCGTGTGCAGCGTTTAATTCCTTTACAGATATTTTAGGTTTTTGACCAAATAAAGGTGGTTGAATATGCAAATCAGAAAACTTATAATACAACCCCCCTTCCCCAGTgccatccaaccatctgcgtctctcAGCTATCGGAGGAACACTGCCcctcccctaaacccatacatcacccagtgcccctcccaaactgctcctcaaattaaatgtatttttattttctaagcATTTTTTTCAAGTTTGAGAATACCATTaccactagggctgcaacgattagtcgatataatcgaaaatgttgattattttaatttgtcgactacaaatttaattgttgactaatcgttaattcGTAATATTATCGCAAACACTTAA

Function

symbol description
kcnt2 Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 57. Orthologous to human KCNT2 (potassium sodium-activated channel subfamily T member 2).

NR:

description
PREDICTED: potassium channel subfamily T member 2

GO: NA

KEGG:

id description
K04946 KCNT1, KNA1.1; potassium channel subfamily T member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677767.1 True 3888 mRNA 0.51 29 1652474 1681323

Neighbor

gene id symbol gene type direction distance location
LOC111194258 NA coding downstream 105475 1539103 ~ 1546999 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding downstream 128789 1510633 ~ 1523685 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding downstream 154886 1491816 ~ 1497588 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 164800 1455453 ~ 1487674 (-)
shh shh,LOC108411758 coding downstream 292061 1345064 ~ 1360413 (-)
LOC103045138 NA coding upstream 14422 1695745 ~ 1700670 (-)
LOC103022462 NA coding upstream 21251 1702574 ~ 1705368 (-)
zbtb41 zbtb41,LOC102777630 coding upstream 28001 1709324 ~ 1717429 (-)
LOC111194260 NA coding upstream 67535 1748858 ~ 1757008 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding upstream 80786 1762109 ~ 1770217 (-)
LOC111194191 NA non-coding downstream 2932 1648750 ~ 1649542 (-)
LOC111194190 NA non-coding downstream 5637 1646080 ~ 1646837 (-)
G138273 NA non-coding downstream 58432 1593418 ~ 1594042 (-)
G138272 cdc73 non-coding downstream 77767 1568837 ~ 1574707 (-)
G138268 NA non-coding downstream 118910 1532000 ~ 1533564 (-)
G138289 NA non-coding upstream 7462 1688785 ~ 1690952 (-)
G138299 NA non-coding upstream 40327 1721650 ~ 1722178 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 129715 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 145779 1827102 ~ 1836713 (-)
G138315 NA non-coding upstream 147073 1828396 ~ 1880995 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 550981 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 935151 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 796372 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1369077 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1414278 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1475427 3156750 ~ 3175353 (-)
G138708 NA other upstream 2151398 3832721 ~ 3833670 (-)

Expression


Co-expression Network