LOC103045138


Basic Information

Item Value
gene id LOC103045138
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1695745 ~ 1700670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677769.1
TCCCGTCTCTCTTTCAGAAGTAGGTTAAAGCTGCGTCCTGAACTGAAGATCAGAATGAGGATCGTCCTGTTTGCTCTGTTCTGTGTTTGGTTGTTTCCAGACAGTAACAATGCTCAGGCCTGTCAGAGTCCAGAACTCAGTCAGGGCTTTCTGGTTCCTCAGCAAGACGTTTATCAGCACGGCTCTAAAGTTTTCTACAGCTGTGATTCCGGCCTGAAACCTGCTCTACAGACGTGGTGGGGGGAGTTAATGTGTGAAAACGGGAAGTGGTCTCACGCTGCTCAGTGTATTGcTGTAAACGACtgttttgcaccagaagtaccGAACGCAAAACCAGTGCAGCCATTACAGACCTCCTACTCCAGTAACAGCAGACTGAACTTCTCCTGTAATAAAGGCTACCAGTTTGAAGAAGTCGATGTTCACGAGGCGGTCTGTACAGACGGACAGTGGAAGCTGCCGATGTGTAAACGGAAACTGACTGCATGTGGTGTGCCTCCCAGTGTTGCTGATGCAGTCATCACACAACCATCCCAGAATATGTTTGATCACACTGATAGAGTAGAATACCGGTGTAAAAATGGACATGAGATGGTCGGAGAGAAATTCAGCTATTGCATGTTTGGAGTTTGGACTTCTGCACCTCAGTGTGgaGTTGCTGAAAGGCCAGCAGTTTCTCACGTCAGAGAGTGTGGACCTTACCCCACTATTGAAAATGGAGATTTTATCGAGGAGTCTGGTGGGAGGGCCTTAAAAGCTGAGTGTGCTTCATATTACAAACTTGAAGGACCCGAACAAGTAATGTGTGTATCAGGACAGTGGTCGAAGCTGCCTGTTTGTAAAgCTCCATGTTTACTGGATCAGTCACAGTTACTTCGCAGTCAAAGAAGATACTTGATACACGGTGAAGAGGATGAATTTTGGTGCAAGTGGGGTGGATGGGTGAAAGTCAAGTGTGTTGATGGAAGAGCGCAATATGAAGGATgtggtcAGTAGTGGGTGCCTGAGGCAAATCTCACCATCCCATCCTCATCTGAAACACACAGTGAGAGCTGCAGAGTGACCGGAGGACCTGCAAATCCTAAAACTCAAACCCTTTTCATCATTACGTTCTCTTTATTCATCCACAATAAAAGCAGAGAACTCAGA

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677769.1 True 1149 mRNA 0.47 9 1695745 1700670

Neighbor

gene id symbol gene type direction distance location
LOC103023075 kcnt2 coding downstream 14422 1652474 ~ 1681323 (-)
LOC111194258 NA coding downstream 148746 1539103 ~ 1546999 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding downstream 172060 1510633 ~ 1523685 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding downstream 198157 1491816 ~ 1497588 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 208071 1455453 ~ 1487674 (-)
LOC103022462 NA coding upstream 1904 1702574 ~ 1705368 (-)
zbtb41 zbtb41,LOC102777630 coding upstream 8654 1709324 ~ 1717429 (-)
LOC111194260 NA coding upstream 48188 1748858 ~ 1757008 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding upstream 61439 1762109 ~ 1770217 (-)
fyttd1 LOC107709339 coding upstream 104167 1804837 ~ 1809651 (-)
G138290 NA non-coding downstream 3430 1638155 ~ 1692315 (-)
G138289 NA non-coding downstream 4793 1688785 ~ 1690952 (-)
LOC111194191 NA non-coding downstream 46203 1648750 ~ 1649542 (-)
LOC111194190 NA non-coding downstream 48908 1646080 ~ 1646837 (-)
G138273 NA non-coding downstream 101703 1593418 ~ 1594042 (-)
G138299 NA non-coding upstream 20980 1721650 ~ 1722178 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 110368 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 126432 1827102 ~ 1836713 (-)
G138315 NA non-coding upstream 127726 1828396 ~ 1880995 (-)
G138325 vps4b non-coding upstream 144659 1845329 ~ 1846510 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 594252 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 978422 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 777025 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1349730 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1394931 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1456080 3156750 ~ 3175353 (-)
G138708 NA other upstream 2132051 3832721 ~ 3833670 (-)

Expression


Co-expression Network