LOC111194260


Basic Information

Item Value
gene id LOC111194260
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1748858 ~ 1757008 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677772.1
AAGTATTAGGATTTCGTAAAGTTGCATTATGTCTACacagtaaaattgaaaaaataaaataaatgtataaaatgtttaaaatgttttgctcTATGTGGATAATCACTTTAAAATCGTGAATTTTTTTGCTGTATCTGCCGCTTTAAGAAAGGTGCCTTTAGTATTTGGGTGGGAAACAAGATGGCATTGTGGTGCCAGAACTGCATCGATTTTCCTGCCCGAGAACTtgtgattttttaatgaaaaatgggCAAAGGGTAGAGAAGGAAAATCCGTAGTAGAAAGCAGTGACTTTTAGGTTTTCTGGACGCAACCTGCAGCCTAGACTTTGGAATACAGTGTTTTGTATTATTAGTGAAGTCCTCGCTAAAGGCCACAGTAAGGGGCAGTGTTGGGtgcgttactttgaaaaagtaattagttatagttactagttacttctccaaaaaagtaactgagttacttcactataaaagtaactagttaccagtaaaagtaactattgcgttactttcaTGTTACTCGGCTCCGTAACTTTGTCTGTATGCacgaagcaaaaaaaaaaaaaaaaaaaagttaattgagcggcaaaagtaacgtgcagtaacggggtgtaatGGGGAAATGGTAAcagtgttatagttacagtcagagtataattagttagattactccttactgaataAAGTAACAGCGTTAGTAACACAGTTTATTTCAACaccgttactcccatcactggtaAGTGGACATAGAGGTCATTTACAAGCGTCCCCTATGTTATCTGAAAAATGATAAACCCTAGAGCCCTATAACCTTCCTTAACTTGACCTGTCATACCAAAGATCTAAATCttcttcttaataaaaaaatgcaagtgGGGATTTTAAATATGTCCTTGTTAAATGGAGATCAATGAGGATTAACATCTAAAAATGTCAATGCAAGACAGTTTTCAGACTGTGGAGAATTGGGACAGGGCCCGAAACCGTCACATTTGATGTCACTGTTTTTCAGGTGTGTGTAATTAGCTTAATTAGTCAGGTCTCCTTTGCATTGTTCCTCTTGGTCGTTGCTGTGCAGCGAGAAATCGAGAACTCAAGCACAATTCAGTTCTATTTCTGGGAAATTGCTgaattttgctaaaaaaaaaaaaaaaaaaaaataaaatgcacgaATGAAGCGTGACGACTAACAGACCGAACACCTCGCAAGTTTTATATACTCGTCGATAAACCTGCTTGACCTGAACTCAGAAATCTGTTGGATTAGAAATGGCTCTCCAACAGACCAGCACATAGAGGCCTGTCCAGAGGGCTGCAGAGGGTATTtaaggagttttagtttaggtgGTTTGTAAAATTTTTTTGTATAGGTGCAGCTTTAGTGTGGTGTGGTGCACTTGTGGTTAGCATGTGTGCAAACTGTGTCGTTTTTGGAATGGGTGGTAAAAGGGACTGGGTGATGTTGAGTTTACTCATTGTTGGGTTGAGCCCTCTTGGACACTGTGCTGCTCTGAAAGATGGAAAGAAGCTGGAATCTTCGAGTGTTTTAAATACGAATACACAGAGAACTCGTATATTGGGTAAGAAAGCTGGAGACCAGAAGCTAAAATCAAAGGTATGGCCCGGAAGACTCATCATTGGGCTAAAGGAGAGTGCTCCTGAGGACTATCACAATATTCCTGAGGGCATGGAAAGTGGCAATGCATCTCCTCATCATGAACCTGGCTATCAGTCTGACCAGGCCGACTGGAGCGATCTGCAACACCTCCAGGGATCGGTCTACGGCTTCGGTGCTCCCTCGTCTCCAGCAGTGCAGCAGCTGCTTGGGATGAGGCCCAAAGTGGAATGTACTGAAGATTTTATGAGGCTGAAGGTTCACGGATCAATCAGTGCCTTTGATTATGGTTTGCTTATTGATCGAGGTAGTGTTCCACCCCTTCCCTTATCGAGAGTTCCTTTAGAGTGTGGCTTCCGAGTACAGAGGAGGTGGAGGGACTTGGACTTTATTGTGCCATATGATGGATGTTATGTATTGCAAGAgAGGGATGCCTATGTTGTCCCAATACGACTGTGTGGATTGGAGGCTAAACTGTCTTGTCCCTTGCTGAATCTGGCTCCAAGTCTTCCTTCTGTCTCCTGTTATCCTAACGGCATGATCGTAAAAACTCAAAATGTTGCCCCTGTTGAGGACCTGCGGGTCAAAGTTGAGAATCAGTGGCAGCTCCTTTTGGATGCATCACCTAAATGTGGCTATAGCATAGTGTCCCACCCAGACGGCGTGGTCATCTCTGCCCCCTATAAGCCGTGCATGGAGGAAAAGAATGAAATGTATTCTCTACACATGGCTGCAAAAACTGAGTTCAGTCTCTTCTGTCCGTCCCTTGTGCCTGGTTTACCTCTTAATCTGTCAAGTCCACATCCACCAAATCTGAGCGACAGCGTTGATGGTTCCACTGTAGACGTAGTGCCGACTGATGCAAGTCCAGAACCCACTCAACGTCCAACAGGCTGGCAATGGTTTGGTCGTCCTCATCAAGGGTATAGACCAGACGCTTTTAAGCCTAAGCCTAGTCCTACTCCTTCTAGCTGGAGAGGTCCATGGCCTACAAGTGTACCATCTGCAGCTACACCACAAAATGTTCCTGGAGTGCATTATCCACAGTTTCCTGAAACATGGTACCCTCCATACCCTCCATACCCTCGGCTAACCCCTACTCCTGCTCCACCAGTTCTCCCACGAAAGCCCAAACCTGTCCAAGATGTTGCTCCTACCTCTGAACCAAGGCCTGCATTTCCAGACCCATCTTCAGAACAACTTGGGGATTTTGGTTACCCACCTCCTGAAGTACCAAGGGAAACTACTTTTCCTAAATATGAGGGTGTCCCCCCACCTGTGTCTCTTGGTACTTACCCTTTCCTATACCTGGGAGACCCTGGACCTGTAAACCCCCCTGAAAACATCTTTGTCCCTGCAGCTCAACCTTATCCACCCCAGTATCCACCCCAATATCCACAAGGGCCTTTACCATCATCTACAGTTGAACCATTTGTTGCCTCTGGTGTTCTTGGGCTGACAGGTTATCACTGGGCACCTACCGAAATGCCCCCGGAATCTGGTCTTCCCCGAGGACCCCAGTGGCCGTATCCATACCAGTACCCACCAAGACCTGCTCTTTCCCCCACGGCTGCACCTCCATTTGAAGCCTCAAGTGTCTTGGGGGCAGCAGGTTCTCGTTACCAGGATGTTTCACAGACATCATCAAACCCTCTTGGCTACCCGCAATGCTGCCAGTCACCAGTAATGTACTCAAACTGTTGCCCACCACCGGTAATCTACCATCAGCACAATCACCACCACTTTGATTTCTCTAATCCCATCTttaaccatggtgcaacatcaAGGTCAACCAGAAACTTGACCTCAAAAGCTTTTTATCATGTTGCGCACCGTGATTCTGCACAGAGATTCGGCGCTACGCAAAACCGGGGTGACTATGCTCATTCCCTGCGGTTAAAAAGATGAAATCCAGCAGGCATCTGCAAAACCCTACCACCGATTTAGCAAGCATACGAAGCTCACAAAGCCAACGACGAGAACACCGATGATGCCTGACTCTTCTACTCCGCCAGCTAAACCTTTTTGGGCTGGTCAGGTGCAGCCGTTATTGTCTGGCTCTTCACAGAACACTCCAAATCCTGTAGCTTTTGCTCATCTTGGAAATCTTGGACATCTTGGAGATAACGATGATAAACCAAGACTTGGACCTGCTCCTAATTTTGGTGAATTCAGTGCTGAATACAGTAGAACAAATCCTCAACCACTGCCTGAACAAGTGCCTGAAGAAAATGCTGGTCCAAGCCTTGTGGAAGACATGTCCTGGAGTGGTCCAGCTCCGCCCATCATTTCAACTTCAGGACAAGCACATTTACCAGACCCCGACCCCTATGTGCTCCTACCTCACCAAAGTTTTCAGCCGAATTATCGAGATCCAGTTAATAACATCCAACGTCCTGATTACAATAACCTTCCTACGTATTTCTCACGTGACCCTTCCACACAAGTGGTGCTCACGGGTTTGGAGACCAGACCTGAACAACAAATGCAAGACCGTAGTTTAACAAATCAAATGATGATAAATCAAGGTGCATCTGAGCAAACTCAAAGCTCTGAGCCTCAAGTTCAACCAAGCGCTCATTCTCAACAGCAGGTTCCTCGTGTTCCTGGTGGACCCCCCAGTGCTCCTTCCTCCAAGGAGCTTACTGAAGCCCCTTCAATGTCACTCTTACAAATGCTCACTGGACCGTTTAGCCAACGCTGGGTTCCTGTTGTTCCACCTAATCAAGTGGAGCAAGCAGGTGGAGTTCGTACGCCCCCAGCAGGCTGCAACCAACTAACTACCAGCCTCATGGTCTTGTTTGACGTTTGTTCCTGTTTGGACGGGAGGATGAAGATGGGCGCTGctttagtgtatttaaaataaaataaaaaataacttaatgatgttaaaaataaaaattgggcTGGATCTTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677772.1 True 4536 mRNA 0.45 7 1748858 1757008

Neighbor

gene id symbol gene type direction distance location
zbtb41 zbtb41,LOC102777630 coding downstream 31429 1709324 ~ 1717429 (-)
LOC103022462 NA coding downstream 43490 1702574 ~ 1705368 (-)
LOC103045138 NA coding downstream 48188 1695745 ~ 1700670 (-)
LOC103023075 kcnt2 coding downstream 67535 1652474 ~ 1681323 (-)
LOC111194258 NA coding downstream 201859 1539103 ~ 1546999 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding upstream 5101 1762109 ~ 1770217 (-)
fyttd1 LOC107709339 coding upstream 47829 1804837 ~ 1809651 (-)
LOC103043415 LOC108430767 coding upstream 66218 1823226 ~ 1830971 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding upstream 166672 1923680 ~ 1965329 (-)
LOC103041268 LOC108430762 coding upstream 212350 1969358 ~ 2070958 (-)
G138299 NA non-coding downstream 26680 1721650 ~ 1722178 (-)
G138290 NA non-coding downstream 56543 1638155 ~ 1692315 (-)
G138289 NA non-coding downstream 57906 1688785 ~ 1690952 (-)
LOC111194191 NA non-coding downstream 99316 1648750 ~ 1649542 (-)
LOC111194190 NA non-coding downstream 102021 1646080 ~ 1646837 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 54030 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 70094 1827102 ~ 1836713 (-)
G138315 NA non-coding upstream 71388 1828396 ~ 1880995 (-)
G138325 vps4b non-coding upstream 88321 1845329 ~ 1846510 (-)
G138329 vps4b non-coding upstream 91849 1848857 ~ 1852968 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 647365 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1031535 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 720687 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1293392 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1338593 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1399742 3156750 ~ 3175353 (-)
G138708 NA other upstream 2075713 3832721 ~ 3833670 (-)

Expression


Co-expression Network