LOC103042896 (dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372)


Basic Information

Item Value
gene id LOC103042896
gene name dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2370824 ~ 2390816 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677790.1
CGCAGTTTCCCCGCTTTTTCTTTCACATCAATTAAAGCAATACAAAAAGCTCGCTGGGAGAGAGTAGACACACGGGCTTTTCCTTGGTAACGACTGTTTTTCCAAGACGAATTCTCGGGTTTTCCGCGTTGATTCCGACCCTTTTCGCTTCGTTTTCGCCCGCCAGACCGAAACGGGACACGATTATGGAGCCAGAAGAGCGTTTCGGGCTGTAACTTCGGCTCGGGAATACTTTGTGCTGGCGTGTTGGAGGTTCCCAAGGAggggagaggagagaagaaagGGAGCGGAGGGGAGCCGTTAAAAAAGTGGTCCGGTTGAAGCGGAGCAGCTCGCAGCCCGTTCCCGGCGAGGGGAAGGGGGAGCCCGGGTCTGGATGAGCGCCGTGCCGCCCTCCCCGAGCTTTCGGCAATGGGGGAAACCAAAGTTATCTACCACCTCGACGAGCAGGAAACTCCGTACCTGGTCAAACTGGCCGTGCCTGCGGAAAGGGTCACACTGTCGGATCTTAAAAATGCTCTTAAGAAGCCGAATCACAAGTTTTTCTTCAAGTCTATGGACGACGACTTTGGGGTGGTCAAGGAGGAAATTACGGATGATAACGCCAAACTTCCCTGCTATAACGGACGTGTGGTATGCTggCTGGTATCAGCGGACGGGTCTCATTCAGACGGATGCTCGGTGGCTGAGAGTCAGCTGGAGCGGCCTCCTTCCGGAGAGAGATCTCAGGGCATCGGAGACTCCAGACCCCCCTCCTTCCATCCAAAAGCTGCAGGCAGCCGGCATGGTGTGGACGATGAGACAGAAACCGACTCTGTGGTGTCCCacaggagagacagagacagaccaCGAAAAAAACATTCACACGAACATTCAGGTGGAAGGATGAATGGCTACTCGCGGGTGGGCAGAGGGATGGACCTGGGTGGCTACGACAGTCGCTCCTCCCTCATGAGCAGCGAACTGGAGTCCAGCAGCTGTTTCGACTCAGACGATGATGGATCAACAAGCCGCTTCAGCAGTGTGACGGAGCAGAGCGGCTCATCGCGCCTGATGAGACGACATCGGCGCCGGCGCCGGAAACCCAAAGCTCATCATATGGAGAGGtCCTCGTCTTTCAGCAGCATCACCGACTCCACCATGTCCCTCAACATCATCACCGTCACTTTAAACATGGAGAAGTATAACTTCTTGGGTATCAGTATCGTGGGGCAGAGTAATGAGCGAGGAGATGGAGGAATCTACATCGGCTCCATCATGAAGGGCGGTGCGGTGGCGGCGGATGGACGGATTGAACCTGGAGACATGCTGCTGCAGGTGAACGACATCAACTTTGAGAACATGTGTAATGACGATGCGGTGCGAGTGCTGAGGGACATCGTGCACAAGCCCGGACCTGTTTCTCTGACTGTGGCAAAGTGCTGGGATCCAAACCCCAACAGCTGCTTCGCCTTACCCAGGAGTGAGCCGATCCGGCCCATTGACCCTGCAGCCTGGGTTTCCCACACTGCAGCCATGACTGGCATCTACCCCCCGTACGGCATGAGCCCCTCAATGAGCACAGTGACCTCCACCAGCTCCTCCATCTCCAGCTCCATTCCTGAAACAGAACGGTTTGATGACTACCACCTGTCTGTCCACAGTGACATGGCAACTGTAGCAAAGGCAATGGCCTGTCCAGACTCTGGGCTGGAGGTTCGAGACAGGATGTGGCTGAAAATCACCATAGCTAATGCTTTTATAGgctcAGACGTGGTGGACTGGCTGTTCCACCATGTGGAAGGTTTTGCTGATCGGCGGGAGGCTCGTAAATACGCCAGCAACCTGCTGAAGGCCGGCTTCATCCGCCATACTGTCAACAAAATCACCTTCTCTGAGCAGTGCTACTACGTGTTCGGAGATCTCTCTGGGAATATGGCTCATCTCTCTCTGCATGAAAACGATGGATCCAGCGGAGCGTCAGATCAGGACACTCTGGCTCCTCTCCTCCACCCAACCGAGGCCCCGTGGCCCAGCTTCCCGTACCCGTACCCCACGCCCCCCTCGCTGCCGGACGGCCCGCAGGCGTACTCTGAAGTAGGAGGAGGAAGTCCCGGCAGTCAGCACAGCGAGGGGAGCAGTGGCTCGAACTGCAGCTGGAGCCGGATGGAGGGGAGGGCGGGGCCGGCAGATTTCAGGCTGGCCGGACCGAGCGAGACGGGACCTGGGTCAGAGTTTGACTTCCGCCGAGAGCGAGCGCCCAGCGAACGTTCAGCAGCGCCCCCTAGTGAGGGCAGTGTGCGCAGCGCCCGCTCTCACACGTACAGCCTAATGCACGCGGCGGCTCGAGCCACGCCGGGGTCTCCGTCAGGACGCCACCTCGCCCACGTGCCCTCAGAGCTCACCGGCTCCCGCCGCTCCTGCAGCACAGCCAATGGGGAGTTCTTTGTAGATATCATGTGACTGAGTGGCCAAATGCCTGAACCTGTACCTACAGCCTTCTGAACTACAGATAAAAACCTAGTGAAACTATAATTGCCTTACTGTTAgattggaaaaacaaaaaaaacacctcaacTGCTGGAGAATTTATAGAGATAGTTCGGTCAAAAATCAGATATGTTCACTTTTCacagtgtatgtatatatacagctctgaaaaaatatgggaaaaaaaagcatttaagaaaaagcattta

Function

symbol description
dvl3a Predicted to enable frizzled binding activity. Acts upstream of or within canonical Wnt signaling pathway; convergent extension involved in axis elongation; and post-anal tail morphogenesis. Located in cell cortex and spindle. Is expressed in liver. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 3. Orthologous to human DVL3 (dishevelled segment polarity protein 3).

NR:

description
PREDICTED: segment polarity protein dishevelled homolog DVL-3-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003148 outflow tract septum morphogenesis biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0005109 frizzled binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677790.1 True 2678 mRNA 0.55 15 2370824 2390816

Neighbor

gene id symbol gene type direction distance location
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding downstream 58163 2302301 ~ 2312661 (-)
LOC103039403 LOC108430760 coding downstream 78420 2234577 ~ 2292404 (-)
LOC103041268 LOC108430762 coding downstream 299866 1969358 ~ 2070958 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding downstream 405495 1923680 ~ 1965329 (-)
LOC103043415 LOC108430767 coding downstream 539853 1823226 ~ 1830971 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding upstream 16458 2407274 ~ 2421524 (-)
LOC107197650 NA coding upstream 46753 2437569 ~ 2441467 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding upstream 56569 2447385 ~ 2464289 (-)
imp3 imp3,LOC107671714 coding upstream 97194 2488010 ~ 2491153 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding upstream 124288 2515104 ~ 2520897 (-)
G138366 NA non-coding downstream 56674 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 64443 2233542 ~ 2306381 (-)
G138343 NA non-coding downstream 411100 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 441315 1929123 ~ 1929509 (-)
G138332 NA non-coding downstream 505073 1864668 ~ 1865751 (-)
LOC103040233 NA non-coding upstream 1781 2392597 ~ 2394885 (-)
G138400 NA non-coding upstream 117016 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding upstream 131710 2522526 ~ 2529626 (-)
G138399 NA non-coding upstream 163336 2554152 ~ 2570647 (-)
G138408 NA non-coding upstream 183504 2574320 ~ 2594954 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1269331 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1653501 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 86879 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 659584 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 704785 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 765934 3156750 ~ 3175353 (-)
G138708 NA other upstream 1441905 3832721 ~ 3833670 (-)

Expression


Co-expression Network