LOC103044426 (LOC108430742)


Basic Information

Item Value
gene id LOC103044426
gene name LOC108430742
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2734466 ~ 2741725 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677812.1
ATCTATCATTATCTCATCATCAAGAGGAGGAACATCATCTTGGGCCAAATGGCAGCCAACAGGGTAACGGTGAATCTGGTGAAGCTGGCTCTTCTGGTGGTACTTGTGGTTCTCACCAACGCATTCCCAACCACAGAGGACACGGACACAGAGGACACAAGTCTTTCTCAGGTGGGACATCGCTCAGCTTTCGCCGCTCTGGACGATGTTCGGCTCATAGCGAACGGTCTCCTGCAGCTCGGCAAGAACCTGAGGGACTTCGTCCAGAAGACAAAGGGACAGATCAACGACATCCTGCAGAAACTCAACATATTCGACAAGTCCTTCTACCAGCTGTCGGTTCTGGCCAGCGAGAtcaaagaggaagaggaggagcttAAGAAGACCACTGTGGTCCTCAAAGCCAGTAACGATGAGATCAAGAGTCTGTCGCTGGAGATAAACTCGAAAGTGGAGGACATCATGAAGGAGAGGATCCAGCTGAGGAACCAGGTCGGGGGTCTGGAGGAGAAGTTGAGTGGGATTTCTCAGGGTCTGCTCTCAGCAGATCAGGTAGCAGAAATTTCAGCACTTAAGGAGGTGATCCAGGTCCAGGAGAGGAGCATCTCAGAGCTGCTGAAGGCTGTGAAGGAGCAAAGTGAGCATCTCAACTTCCAGAAGAACAAGATCAAGGGACTGGAGAATAAGCTCAACTCTGCCAGCCATCAAGAAACTACAGCTAAACTCCGATGGGACTCACAAACCTACAGCATGTCGGATTATCTCACCAACTATTccactgatggaagtttctccAGTGATTTCCCGAAGGACTGCGGCGAGGCTTTCAGCATGGGGGAGAACGCTAGTGGGCTGTATGCAATCAAACCGAACCAATCAGAAGCTTTTCTTGTGCTCTGTGAATTCACTGAAGACGGAGCGTTCACGGTGATCCAGCGCAGACAGGACGGCTCTGTGGATTTTAACCTGCCCTGGCAGAGCTATGAGGACGGATTCGGAGActtcaggaGTGAGTTCTGGCTCGGCTTGAGGAAGATCTTCTCCATCTCTCAGCATGGTGGCTCTCTCCTGCACGTTCAGATGGAGGACTGGAAGCAGGAGAAGCATCTGATGGAGTTCCAGTACAGACTGGAGGGTCCTGCCTCCAACTACACCATCCACCTCCGACCAGCCCACCTGAGCACTGAGACCGACACCCAGACAGGAATGAGGTTCTCCACTAAAGACCACCATGATGAAAATAACTCCAGGAGCTGTGCTCACGACTACACAGGAGGCTGGTGGTTCAGCACTTGCGATGACATCAACCCGAATGGGAAATGCATCCAGAGCAGACCCCGCAGGAAGCACAATAAGGGACACGTCCAATTCAAGTCCTCTCAAATCTCTATATTTCATGCTAAAAAGACTTAATTCCACTTGTAGTGTGAAAAGACACTGGTATGATACAGGATCTGAGTTCCTGTTATTCAATAGGGgcagttttagagttttagcaCTGGACCTAAGTAGACAACGGACTACAAACCCCATCAGCCTGCagaaaaatgtgaaatgaaCTGAGATATATTGTTCTGAAATACACTGAATACAAATGTGAagtagaagaaaataaatacataaaaaaa

Function

NR:

description
PREDICTED: angiopoietin-related protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677812.1 True 1628 mRNA 0.49 7 2734466 2741725

Neighbor

gene id symbol gene type direction distance location
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding downstream 2750 2717466 ~ 2731716 (-)
LOC103045751 leprot,LOC108430744 coding downstream 46823 2683660 ~ 2687643 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding downstream 61833 2609710 ~ 2672633 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding downstream 146143 2571406 ~ 2588323 (-)
tctex1d1 tctex1d1 coding downstream 166953 2564530 ~ 2567513 (-)
LOC103046677 lrp8,LOC107671705,LOC107719273,LOC107681710,LOC107559340 coding upstream 25466 2767191 ~ 2881863 (-)
LOC103047584 NA coding upstream 181435 2923160 ~ 2927621 (-)
fam159a fam159a,LOC106598084 coding upstream 190038 2931763 ~ 2936532 (-)
scp2 scp2,scp2a coding upstream 241261 2982986 ~ 2996307 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 254829 2996554 ~ 3000039 (-)
G138416 NA non-coding downstream 78029 2619007 ~ 2656437 (-)
G138408 NA non-coding downstream 139512 2574320 ~ 2594954 (-)
G138399 NA non-coding downstream 163819 2554152 ~ 2570647 (-)
G138400 NA non-coding downstream 202569 2507832 ~ 2531897 (-)
G138445 NA non-coding upstream 24482 2766207 ~ 2767115 (-)
G138446 NA non-coding upstream 27274 2768999 ~ 2855818 (-)
G138450 NA non-coding upstream 46650 2788375 ~ 2789109 (-)
G138452 NA non-coding upstream 105833 2847558 ~ 2849202 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 280390 3022115 ~ 3023372 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 247572 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1632973 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2017143 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 308675 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 353876 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 415025 3156750 ~ 3175353 (-)
G138708 NA other upstream 1090996 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1105997 3847722 ~ 3861356 (-)

Expression


Co-expression Network