LOC103045355 (LOC108430731)


Basic Information

Item Value
gene id LOC103045355
gene name LOC108430731
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3050400 ~ 3062759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677821.1
AGCTGAGAAGAGATAGACAGCAACCATAACCTGTTAGAAGAGAGAGACAACTAAGAAATGAAGCGGTTCTGAAAgaaatttaatacttttaaaagtCTGAAAAGAAGGAAAGTGGTGGAAAATGTCTTCTGTTCCAGTACAGCAGCCCTCAGACTCGACGGAGTTCACAGTGGAGGCGGTGGAGAGGGCGCTGCAGCAGCTGTACTATGATCCAGACATGACCCAGAAAAACGTGGCCCAGAAGTGGCTGAGCCAGGCCCAAGCATCGCCACAAGCCTGGCTCTTCTGCTGGGCACTGCTTAGGCCTGATAAGGTTCCTGAGATTCAGTTTTTCGGGGCCAGTACTCTACACGCTAAAATCACCCGCCACTGGACGGACCTCCCTGCTGAGCAGCACGAGTCTCTGCGCTCCCAGCTCATCGCTGAGGTGGGTCGTTTCTCCTGCGGGCCAAAAATGGTTCTGACGCGGCTCTGCGTGGCTCTGGCTTCTCTGATTCTCCACAATCTGCTGGACAGTTGGACCACTGCGGTCCCGGACCTCCTGAGAGCGTTCCAGGGAGGCGAGGGGTCGGTGGAGGTGGATGTCAGGCACCAGGCACTGCTGGAGGTTCTGGTGGTGCTCCCGGAGGAGCTCCAGATCAGGAAGCTGCCTGCTGAACGTCGAGCTCATCTACAGAGAGCTTTAGCCCAGGAGTGGAGTTCACTTTGCCCTATACTGCGGCAGATCCTGCGCAAAGAGACTACAGCAGGACAGGTGAAAGAACGTGTGCTGAGGTGCCTTTCCTCCTGGCTGGCTCTGGATGTGGATCTGGGTGAAAGTGAAGGCCTTCTGCAGGACAGCTTTACGCTTCTAAAGGAGCGGGAGCTCTTTGACACGGCTGTGGAGACTCTCGTCAGCGCTATTTCACAGTGTGACTGCCAGAGGTTTGTTGACAGTCTGCTGAAGATGATGCCTCAGGTGTTGGCTCTTCAGGAGCCTCTGAAGAAATCAGTTCAGGACAGAGACATGGAGACATGTCATGGAATCTGCCGCATCGCTGTGGCACTTGGGGAAACTCATTGCAGgACTCTTCTGGAGCAGGTAGACCAGTGGCAGGGTTTCCAGGCTTTAGTTAGTATGATTCTGTCCTGCACTGGGATGCCTGGACATTACCCTGTGGATGAAACCTCCAGCTCCCTCACACTCACATTCTGGTACACGTTACAGGATGACATCATGTCTCTGGACACGGAGAAGCAGACGCTGTACCTGCAGGTTTACAGACCAGTTTACTTCCAGCTGGTGGAGGTGTTGCTGCATAAGGCTCGTTTCCCCAGTGACCAGGAATTCACCTCATGGTCATCTGATGACAAGGAGCAGTTCAGAACCTACAgAGTTGACATCTCAGACACTCTGATGTGCGTCTATGAGCTGCTTGGCCCGGAGCTGTTGCGTAACCTTTACGATAAACTGGGGGTGCTGCTGACGGACACCACACACTCGTCCTCGTGGCAGGATGTAGAGGCTCTGCTGTACGGGTTTCAGTCCATAGCTGAGACGGTGGACGTCAGTTACTCTGATGTCATTCCTGGTCTGATTGGTCTTATCCCTCTCATCACTGCTACCAACGTTCAACTGGCCGAAACCATCATGCTCACAATAGGGTCGCTGGCGGAGTGGCTGGCGGATCACTCCATCATGCTGGCCGGTGCTCTGCGTCTGGTCCTCCAGGCTCTATCCAACGCTGACCTCTCAGTCTCCACTGTCTCCACCCTGAAGAGGATCTGCCGTGAGTGTCGCCACCACCTGCGGCCTCACGCTAACGACATCCTGACAGCTTCACAGGAGGTTCTGGTTAAACAGATCCATAAGACCACTCAGATCATGTGGCTGATGCAGGCTCTGGGTTATCTGCTGTCATCTCTTCCTGATGAGGAGATTCTGGGGAAgctcctctctctgctctctccacACATCCAGCAGCTGGAGAGACTAGCCAACGAGACACCCAGTCCGGCTAGTAAACTCTCCACTCTTCACATTCTGGGCCTCATCTCCAGCATCTTCTCCACTTTAGACCTGAACACACAAAGAGAGGGACAGGAGGACAGCAGGAACTCTCACTTTCAGCCTCACGCCAACCCAgTTGTAGTCGTGCTACAGCAGGTTTTCCCTCTTATCCAGACTCTTCTGAGTAAGTGGCTTAAGGAGACTGAGGTAGTGACGGCTGCCTGTGCTGTTTTTGAGAAATCCCTAAAGACCCTCATCCGTGACTTTGCCCCCCTTGTTGATCagctctgtgagctgattggtcagTTGTTCAGCTCTTATCCACAAGCCTGTGCTTTGGACCTCACACGACAGTTGGTTCATGTATTTGCCTGTGAAAAGGAGCATTTCCCACCAATTGCAGCTCTTCTAGAACTCGTCACAAGCATCACCATGGCAATTTTTCAGCATGGTGCTCGAGATCATCCTGATGTGGCAGACTCATTCATGCAGCTTCACACACAGGTTATGAAAAGGAAGCCTGATGTGTATCTTACAGGGGGTCTGGATATAAAAGTGGTTTTCTATTGTGGGATTTTATCATTCAAATTTCCAGAGACGCCTACTGTGAAGTCTActtgtttattatttACAGAGCTGATTTCTCACTGTGAGGATCTACCAGAGGTGAGGGAAGTGCTACAGGAGGATGGTCTTCTGCTGCTCCAGACCCTGCTGGAGTCTATTGGAGGTCAGTCCCGTGGACTGTTGGAGCACCAGTCTGAGGTGATGTTCTCTGTGAGCCGTTACTGCCCCACCCTGCTGTCACTCCAGCTCAGAGACGCCCTGCAGCCCCCCGGCTTCCCCAGCGCCCTCCTCACCCCAGAGCAGAAAGAGCACTTCTGTCAGCAGGTCCTCAGaGAACAACTGAGCAAGTGGAAGATGCGGGACGTCATAAAGgagttttctctgctgtgtcAGGGCCTGCCGGGAGTGGAATATGCAGCCAGTTATTAAAGCCCAGAGTAAAaacaatacacattttataatgGACACAAGGCCCGAAGGAGAGAAGATAAGTGACGATGCACTTTCAGATTAACCTGGATGCGCTGGCCTGGACTGGTTGAAGCTGAACGTTGAGcagtttaaatattattatatgtttgaTTTTAGTAAACTgttggttttggttttgttttttgaccAATTTTGTACTacaactaccgtatttttcgcactataaggtgcactaatcCATTAATTTTCCCAGATATaaccagtgcaccttataatccagtgca
>XM_022677822.1
AGCTGAGAAGAGATAGACAGCAACCATAACCTGTTAGAAGAGAGAGACAACTAAGAAATGAAGCGGTTCTGAAAgaaatttaatacttttaaaagtCTGAAAAGAAGGAAAGTGGTGGAAAATGTCTTCTGTTCCAGTACAGCAGCCCTCAGACTCGACGGAGTTCACAGTGGAGGCGGTGGAGAGGGCGCTGCAGCAGCTGTACTATGATCCAGACATGACCCAGAAAAACGTGGCCCAGAAGTGGCTGAGCCAGGCCCAAGCATCGCCACAAGCCTGGCTCTTCTGCTGGGCACTGCTTAGGCCTGATAAGGTTCCTGAGATTCAGTTTTTCGGGGCCAGTACTCTACACGCTAAAATCACCCGCCACTGGACGGACCTCCCTGCTGAGCAGCACGAGTCTCTGCGCTCCCAGCTCATCGCTGAGGTGGGTCGTTTCTCCTGCGGGCCAAAAATGGTTCTGACGCGGCTCTGCGTGGCTCTGGCTTCTCTGATTCTCCACAATCTGCTGGACAGTTGGACCACTGCGGTCCCGGACCTCCTGAGAGCGTTCCAGGGAGGCGAGGGGTCGGTGGAGGTGGATGTCAGGCACCAGGCACTGCTGGAGGTTCTGGTGGTGCTCCCGGAGGAGCTCCAGATCAGGAAGCTGCCTGCTGAACGTCGAGCTCATCTACAGAGAGCTTTAGCCCAGGAGTGGAGTTCACTTTGCCCTATACTGCGGCAGATCCTGCGCAAAGAGACTACAGCAGGACAGGTGAAAGAACGTGTGCTGAGGTGCCTTTCCTCCTGGCTGGCTCTGGATGTGGATCTGGGTGAAAGTGAAGGCCTTCTGCAGGACAGCTTTACGCTTCTAAAGGAGCGGGAGCTCTTTGACACGGCTGTGGAGACTCTCGTCAGCGCTATTTCACAGTGTGACTGCCAGAGGTTTGTTGACAGTCTGCTGAAGATGATGCCTCAGGTGTTGGCTCTTCAGGAGCCTCTGAAGAAATCAGTTCAGGACAGAGACATGGAGACATGTCATGGAATCTGCCGCATCGCTGTGGCACTTGGGGAAACTCATTGCAGgACTCTTCTGGAGCAGGTAGACCAGTGGCAGGGTTTCCAGGCTTTAGTTAGTATGATTCTGTCCTGCACTGGGATGCCTGGACATTACCCTGTGGATGAAACCTCCAGCTCCCTCACACTCACATTCTGGTACACGTTACAGGATGACATCATGTCTCTGGACACGGAGAAGCAGACGCTGTACCTGCAGGTTTACAGACCAGTTTACTTCCAGCTGGTGGAGGTGTTGCTGCATAAGGCTCGTTTCCCCAGTGACCAGGAATTCACCTCATGGTCATCTGATGACAAGGAGCAGTTCAGAACCTACAgAGTTGACATCTCAGACACTCTGATGTGCGTCTATGAGCTGCTTGGCCCGGAGCTGTTGCGTAACCTTTACGATAAACTGGGGGTGCTGCTGACGGACACCACACACTCGTCCTCGTGGCAGGATGTAGAGGCTCTGCTGTACGGGTTTCAGTCCATAGCTGAGACGGTGGACGTCAGTTACTCTGATGTCATTCCTGGTCTGATTGGTCTTATCCCTCTCATCACTGCTACCAACGTTCAACTGGCCGAAACCATCATGCTCACAATAGGGTCGCTGGCGGAGTGGCTGGCGGATCACTCCATCATGCTGGCCGGTGCTCTGCGTCTGGTCCTCCAGGCTCTATCCAACGCTGACCTCTCAGTCTCCACTGTCTCCACCCTGAAGAGGATCTGCCGTGAGTGTCGCCACCACCTGCGGCCTCACGCTAACGACATCCTGACAGCTTCACAGGAGGTTCTGGTTAAACAGATCCATAAGACCACTCAGATCATGTGGCTGATGCAGGCTCTGGGTTATCTGCTGTCATCTCTTCCTGATGAGGAGATTCTGGGGAAgctcctctctctgctctctccacACATCCAGCAGCTGGAGAGACTAGCCAACGAGACACCCAGTCCGGCTAGTAAACTCTCCACTCTTCACATTCTGGGCCTCATCTCCAGCATCTTCTCCACTTTAGACCTGAACACACAAAGAGAGGGACAGGAGGACAGCAGGAACTCTCACTTTCAGCCTCACGCCAACCCAgTTGTAGTCGTGCTACAGCAGGTTTTCCCTCTTATCCAGACTCTTCTGAGTAAGTGGCTTAAGGAGACTGAGGTAGTGACGGCTGCCTGTGCTGTTTTTGAGAAATCCCTAAAGACCCTCATCCGTGACTTTGCCCCCCTTGTTGATCagctctgtgagctgattggtcagTTGTTCAGCTCTTATCCACAAGCCTGTGCTTTGGACCTCACACGACAGTTGGTTCATGTATTTGCCTGTGAAAAGGAGCATTTCCCACCAATTGCAGCTCTTCTAGAACTCGTCACAAGCATCACCATGGCAATTTTTCAGCATGGTGCTCGAGATCATCCTGATGTGGCAGACTCATTCATGCAGCTTCACACACAGGTTATGAAAAGGAAGCCTGATGTGTATCTTACAGGGGGTCTGGATATAAAAGTGGTTTTCTATTGTGGGATTTTATCATTCAAATTTCCAGAGACGCCTACTGTGAAGTCTActtgtttattatttACAGAGCTGATTTCTCACTGTGAGGATCTACCAGAGGTGAGGGAAGTGCTACAGGAGGATGGTCTTCTGCTGCTCCAGACCCTGCTGGAGGTCAGACCTGATCATTGCAACTGATCACACTCAGAAAATAATCCAAAGTAGACCATCTATTGGAGGTCAGTCCCGTGGACTGTTGGAGCACCAGTCTGAGGTGATGTTCTCTGTGAGCCGTTACTGCCCCACCCTGCT
>XR_002651005.1
AAGCTGAGAAGAGATAGACAGCAACCATAACCTGTTAGAAGAGAGAGACAACTAAGAAATGAAGCGGTTCTGAAAgaaatttaatacttttaaaagtCTGAAAAGAAGGAAAGTGGTGGAAAATGTCTTCTGTTCCAGTACAGCAGCCCTCAGACTCGACGGAGTTCACAGTGGAGGCGGTGGAGAGGGCGCTGCAGCAGCTGTACTATGATCCAGACATGACCCAGAAAAACGTGGCCCAGAAGTGGCTGAGCCAGGCCCAAGCATCGCCACAAGCCTGGCTCTTCTGCTGGGCACTGCTTAGGCCTGATAAGGTTCCTGAGATTCAGTTTTTCGGGGCCAGTACTCTACACGCTAAAATCACCCGCCACTGGACGGACCTCCCTGCTGAGCAGCACGAGTCTCTGCGCTCCCAGCTCATCGCTGAGGTGGGTCGTTTCTCCTGCGGGCCAAAAATGGTTCTGACGCGGCTCTGCGTGGCTCTGGCTTCTCTGATTCTCCACAATCTGCTGGACAGTTGGACCACTGCGGTCCCGGACCTCCTGAGAGCGTTCCAGGGAGGCGAGGGGTCGGTGGAGGTGGATGTCAGGCACCAGGCACTGCTGGAGGTTCTGGTGGTGCTCCCGGAGGAGCTCCAGATCAGGAAGCTGCCTGCTGAACGTCGAGCTCATCTACAGAGAGCTTTAGCCCAGGAGTGGAGTTCACTTTGCCCTATACTGCGGCAGATCCTGCGCAAAGAGACTACAGCAGGACAGGTGAAAGAACGTGTGCTGAGGTGCCTTTCCTCCTGGCTGGCTCTGGATGTGGATCTGGGTGAAAGTGAAGGCCTTCTGCAGGACAGCTTTACGCTTCTAAAGGAGCGGGAGCTCTTTGACACGGCTGTGGAGACTCTCGTCAGCGCTATTTCACAGTGTGACTGCCAGAGGTTTGTTGACAGTCTGCTGAAGATGATGCCTCAGGTGTTGGCTCTTCAGGAGCCTCTGAAGAAATCAGTTCAGGACAGAGACATGGAGACATGTCATGGAATCTGCCGCATCGCTGTGGCACTTGGGGAAACTCATTGCAGgACTCTTCTGGAGCAGGTAGACCAGTGGCAGGGTTTCCAGGCTTTAGTTAGTATGATTCTGTCCTGCACTGGGATGCCTGGACATTACCCTGTGGATGAAACCTCCAGCTCCCTCACACTCACATTCTGGTACACGTTACAGGATGACATCATGTCTCTGGACACGGAGAAGCAGACGCTGTACCTGCAGGTTTACAGACCAGTTTACTTCCAGCTGGTGGAGGTGTTGCTGCATAAGGCTCGTTTCCCCAGTGACCAGGAATTCACCTCATGGTCATCTGATGACAAGGAGCAGTTCAGAACCTACAgAGTTGACATCTCAGACACTCTGATGTGCGTCTATGAGCTGCTTGGCCCGGAGCTGTTGCGTAACCTTTACGATAAACTGGGGGTGCTGCTGACGGACACCACACACTCGTCCTCGTGGCAGGATGTAGAGGCTCTGCTGTACGGGTTTCAGTCCATAGCTGAGACGGTGGACGTCAGTTACTCTGATGTCATTCCTGGTCTGATTGGTCTTATCCCTCTCATCACTGCTACCAACGTTCAACTGGCCGAAACCATCATGCTCACAATAGGGTCGCTGGCGGAGTGGCTGGCGGATCACTCCATCATGCTGGCCGGTGCTCTGCGTCTGGTCCTCCAGGCTCTATCCAACGCTGACCTCTCAGTCTCCACTGTCTCCACCCTGAAGAGGATCTGCCGTGAGTGTCGCCACCACCTGCGGCCTCACGCTAACGACATCCTGACAGCTTCACAGGAGGTTCTGGTTAAACAGATCCATAAGACCACTCAGATCATGTGGCTGATGCAGGCTCTGGGTTATCTGCTGTCATCTCTTCCTGATGAGGAGATTCTGGGGAAgctcctctctctgctctctccacACATCCAGCAGCTGGAGAGACTAGCCAACGAGACACCCAGTCCGGCTAGTAAACTCTCCACTCTTCACATTCTGGGCCTCATCTCCAGCATCTTCTCCACTTTAGACCTGAACACACAAAGAGAGGGACAGGAGGACAGCAGGAACTCTCACTTTCAGCCTCACGCCAACCCAgTTGTAGTCGTGCTACAGCAGGTTTTCCCTCTTATCCAGACTCTTCTGAGTAAGTGGCTTAAGGAGACTGAGGTAGTGACGGCTGCCTGTGCTGTTTTTGAGAAATCCCTAAAGACCCTCATCCGTGACTTTGCCCCCCTTGTTGATCagctctgtgagctgattggtcagTTGTTCAGCTCTTATCCACAAGCCTGTGCTTTGGACCTCACACGACAGTTGGTTCATGTATTTGCCTGTGAAAAGGAGCATTTCCCACCAATTGCAGCTCTTCTAGAACTCGTCACAAGCATCACCATGGCAATTTTTCAGCATGGTAAGACttctacacttaaaaaaaagGTGCTCGAGATCATCCTGATGTGGCAGACTCATTCATGCAGCTTCACACACAGGTTATGAAAAGGAAGCCTGATGTGTATCTTACAGGGGGTCTGGATATAAAAGTGGTTTTCTATTGTGGGATTTTATCATTCAAATTTCCAGAGACGCCTACTGTGAAGTCTActtgtttattatttACAGAGCTGATTTCTCACTGTGAGGATCTACCAGAGGTGAGGGAAGTGCTACAGGAGGATGGTCTTCTGCTGCTCCAGACCCTGCTGGAGTCTATTGGAGGTCAGTCCCGTGGACTGTTGGAGCACCAGTCTGAGGTGATGTTCTCTGTGAGCCGTTACTGCCCCACCCTGCTGTCACTCCAGCTCAGAGACGCCCTGCAGCCCCCCGGCTTCCCCAGCGCCCTCCTCACCCCAGAGCAGAAAGAGCACTTCTGTCAGCAGGTCCTCAGaGAACAACTGAGCAAGTGGAAGATGCGGGACGTCATAAAGgagttttctctgctgtgtcAGGGCCTGCCGGGAGTGGAATATGCAGCCAGTTATTAAAGCCCAGAGTAAAaacaatacacattttataatgGACACAAGGCCCGAAGGAGAGAAGATAAGTGACGATGCACTTTCAGATTAACCTGGATGCGCTGGCCTGGACTGGTTGAAGCTGAACGTTGAGcagtttaaatattattatatgtttgaTTTTAGTAAACTgttggttttggttttgttttttgaccAATTTTGTACTacaactaccgtatttttcgcactataaggtgcactaatcCATTAATTTTCCCAGATATaaccagtgcaccttataatccagtgca

Function

NR:

description
PREDICTED: importin-13-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677821.1 False 3273 mRNA 0.51 22 3050400 3062758
XM_022677822.1 False 2848 mRNA 0.52 21 3051322 3062758
XR_002651005.1 True 3300 misc_RNA 0.51 22 3050400 3062759

Neighbor

gene id symbol gene type direction distance location
LOC103023705 LOC103023705,LOC108430734,LOC105891340,LOC108267618,LOC107577377,LOC107560788 coding downstream 16332 3029732 ~ 3034068 (-)
LOC103023383 LOC108430736,LOC108267617 coding downstream 21306 3025242 ~ 3029094 (-)
LOC103022773 uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616 coding downstream 43734 3000121 ~ 3006666 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 50361 2996554 ~ 3000039 (-)
scp2 scp2,scp2a coding downstream 54093 2982986 ~ 2996307 (-)
LOC103045647 NA coding upstream 8391 3071150 ~ 3082049 (-)
LOC111194268 LOC108430728 coding upstream 21983 3084742 ~ 3086475 (-)
LOC103025183 ppm1la,ppm1l,LOC108430727,LOC107722109,LOC107681725,LOC107701333 coding upstream 26632 3089391 ~ 3099890 (-)
LOC107197653 NA coding upstream 57220 3119979 ~ 3150877 (-)
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding upstream 114907 3177666 ~ 3184535 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 27028 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 194582 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 201198 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 261291 2788375 ~ 2789109 (-)
G138445 NA non-coding downstream 283285 2766207 ~ 2767115 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 88162 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 131834 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 478212 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 522425 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 536504 3599263 ~ 3599510 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 563506 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1948907 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2333077 695903 ~ 717323 (-)
LOC103025790 NA other upstream 32842 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 93991 3156750 ~ 3175353 (-)
G138708 NA other upstream 769962 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 784963 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 1268112 4330871 ~ 4338197 (-)

Expression


Co-expression Network