LOC111194190


Basic Information

Item Value
gene id LOC111194190
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1646080 ~ 1646837 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650980.1
CTCCCGTCTCTCTTTCAGAAGTAGGTTAAAGCTGCGTCCTGAACTGAAGATCAGAATGAGGATCGTCCTGTTTGCTCTGTTCTGTGTTTGGTTGTTTCCAGACAGTAACAATGCTCAGGCCTGTCAGAGTCCAGAACTCAGTCAGGGCTTTCTGGTTCCTCAGCAAGACGTTTATCAGCACGGCTCTAAAGTTTTCTACAGCTGTGATTCCGGCCTGAAACCTGCTCTACAGACGTGGTGGGGGAGTTAATGTGTGAAAACGGGAAGTGGTCTCACGCTGCTCAGTGTATTGcTGTAAACGACtgttttgcaccagaagtaccGAACGCAAAACCAGTGCAGCCATTACAGACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650980.1 True 356 lncRNA 0.49 3 1646080 1646837

Neighbor

gene id symbol gene type direction distance location
LOC111194258 NA coding downstream 99081 1539103 ~ 1546999 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding downstream 122395 1510633 ~ 1523685 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding downstream 148492 1491816 ~ 1497588 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 158406 1455453 ~ 1487674 (-)
shh shh,LOC108411758 coding downstream 285667 1345064 ~ 1360413 (-)
LOC103023075 kcnt2 coding upstream 5637 1652474 ~ 1681323 (-)
LOC103045138 NA coding upstream 48908 1695745 ~ 1700670 (-)
LOC103022462 NA coding upstream 55737 1702574 ~ 1705368 (-)
zbtb41 zbtb41,LOC102777630 coding upstream 62487 1709324 ~ 1717429 (-)
LOC111194260 NA coding upstream 102021 1748858 ~ 1757008 (-)
G138273 NA non-coding downstream 52038 1593418 ~ 1594042 (-)
G138272 cdc73 non-coding downstream 71373 1568837 ~ 1574707 (-)
G138268 NA non-coding downstream 112516 1532000 ~ 1533564 (-)
G138253 NA non-coding downstream 136584 1507992 ~ 1509496 (-)
G138266 NA non-coding downstream 154394 1490928 ~ 1491686 (-)
LOC111194191 NA non-coding upstream 1913 1648750 ~ 1649542 (-)
G138289 NA non-coding upstream 41948 1688785 ~ 1690952 (-)
G138299 NA non-coding upstream 74813 1721650 ~ 1722178 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 164201 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 180265 1827102 ~ 1836713 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 544587 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 928757 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 830858 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1403563 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1448764 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1509913 3156750 ~ 3175353 (-)
G138708 NA other upstream 2185884 3832721 ~ 3833670 (-)

Expression


Co-expression Network