XLOC_007233


Basic Information

Item Value
gene id XLOC_007233
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 18992153 ~ 19000316 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016193
TTTTACAGACGTTTATGGATCTATAGTGAGAGCGCGCGCTCAATCTGTCCGGCCCGCGAATGAAGCTGTGGAAGACGTCTTGCAACATTTCTAAACTACTGAGGCACTGCGCACCCCTGAAACGTATGATTCTGCTGTTCATGATTTACAATCTGAAGACCGTCAAGACATCAAAGGAATAAAGGCCAGACACCAGAAACAAGCAGCTCACCACAACCTTCCACAGCCTTGCATAGTT
>TCONS_00015967
TGGATCTATAGTGAGAGCGCGCGCTCAATCTGTCCGGCCCGCGAATGAAGCTGTGGAAGACGTCTTGCAACATTTCTAAACTACTGAGGCACTGCGCACCCCTGAAACGTATGATTCTGCTGTTCATGATTTACAATCTGAAGACCGTCAAGACATCAAAGGAATAAAGTAATGACTGACTTGGAGACAACATTTCTACGTACTGCCATCACTGAGGTCTTGCCTAACCTTCCAGAGGCAACAAAAGACATTTTAGAGGAGTTATTGCAATCCATTGGAGTGGAGACATATGATGATTTTCAGTTTATTGAGGAATGCGATTTGCTGACAGCATTGAGGCCAATCCAAGCTCGAAAAGTCCTTGCTGCTTGGAAGTTAAGATGCCAGACACCAGAAACAAGCAGCTCACCACAACCTTCCACAGCCTTGCATAGTTTACCTGCAAGCTCTGAATCTTCCTCCACCAGCAGCTCCCAAAGCCCAGATGTAGGCTGGGTGGATACGTTTCTGATACCATGGGATACATTTCCTCAGGAACTAATGCAATTTTTGGAGAGAGGAAAACGACTAAGTCCACGAATGAGAAGAGAGATGGTCCGAATTGTGGTAAATGAGATGATGCGAAAATGTTCATGCCCAAATAAAAGGAATTCTACTGAAGTTGCCAAAAAGATGGTAGCAAAGTATCCAGAGTCTCTCCTGGATGTAATAGAGGGGGATGTGGTTGGGCCAGGGTACCATTCTTTAGTGAAGCAGTTGCAGTATAGGATTGAAAATGTGAAGCGATCTACGACACCCAAAATAAGAAAACGAAGACATCAGACTGATGACTCTGACACGGACGAAATTCCTCCAGAAAAGAGGGCAGCAATTCAGGATACGTATGGATGCATTAACTGGCATGTAAAATTCCTGCCACAGGGAGAGACCTCTGAAAGTcaggaggaaaagaaagagaaaatgaagATAATGTCTCGTCAAACTGATGCAAACGCAGAAGAAGTCAGACATCTAATGAAATTGACTTTCTACACACAACGTAACCAAGTCAATCAGGGCAAGAATATAAAATGCCTCCTGGAGGATTGGCCATGGTGGTTTAATGAGCTTGGCATGGCAGTTCACTACAAGGAGCTTACCGGAATTGGTCTTTATGAAACTTTCACACGGAATCTGGACTTGAAGGTGAAACGACTACTAAACTACTTCAGTACTGTTGgtgtgaacaaaaacaaaaagttccTGCAGGACTTAACAAAGTTTAAAATGATGAGGGGAGAGCTAAGTGGTTGCTCTGAAGATGTGAAAGAGATGTTGATGCTTTTGATTTCCTACTTTAATGAGAAGGAAGATGCTATGTTCTGTCATGTGGAGGACACATGCCTCGCAGAAGAGGTAGAGATGGACAAAGTTAATTTGACCCCAACACTTGTTGTGTGTggCCAATCCTGCTTTTCGTCGAAGCGTTTCATGCTGTGTGTGGATCAAAATATTGTACATGACAACATCCCCTCCTTCATTTCCGCCCTGTGCATGATGTTTGGAAGCTATTATTGCTTTAACATCCATTACCCATCAGAGCTGGCATCAACCTTGGAGTTTTTGcagagGTGTTTCTTCTCTATCAACCCAGAGAAAGGCACTAAAGTGGAGGAGACAAACACAGCCCGACTTCATGTGAACCCAAGAGTTCTTACCTTGATTCAGGCGCTTTCAGATCATGAATGGCGTGACGTCTAAATATGGACTGAAGTCAGTAAGATTTGACAAACAGTGAATGCCAGTTTCTCAGGTTTATTTGATCTGCCATGCTTAATGTATGTGTTAAGTTTGTACACAACTGTTAAGAGTTTTTATTGCTCTAGTGTTTTCTGAATTAGGTTATTTCTGAATTGCTTGTTTGTATggaatatttgtttataaaacaactCTTAAATGTTCTTAAACCGATTTAAGAGAAAAGTcagtaacattttataataactacacactataaataatttattaagcattagcatatagTGAATTCATTAACTGTTGAGCACTAACtctaaattaataaacattatttggcAGTTTATAACAACTGctaaaatgctgtattcttgatttAAAAACACGTGTAATGTGCCtaataattgtgttttcatactttgttaatgattcttTTTTCATTACTGAATTAAGtactgcattatttacaaaccagttgtattttaGAGTATTtcagggtttttaggatcatttagAATGAATTGgtaaatggttaataaactattcaaatcaacatttataattcttattattcaggcatatattaatagttaatttgtatgttatttaattctttattaactcaactttatcCTCACTAATCCAAAGTGAGgactatgctttataaatcccttataaatgacaattaaatgtttagtttagtttagaaataattgataaagaaaagtttttttttttcatttctatttattttaaaatcc

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0071599 otic vesicle development biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0061061 muscle structure development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0030903 notochord development biological_process
GO:0030916 otic vesicle formation biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016193 False 238 lncRNA 0.47 3 18992153 18995961
TCONS_00015967 True 2495 lncRNA 0.38 6 18992168 19000316

Neighbor

gene id symbol gene type direction distance location
XLOC_007232 CT573252.1 coding upstream 192595 18799434 ~ 18799558 (+)
XLOC_007231 si:ch211-111e20.1 coding upstream 202372 18781082 ~ 18789781 (+)
XLOC_007230 NA coding upstream 460598 18508628 ~ 18531555 (+)
XLOC_007229 NA coding upstream 696034 18291282 ~ 18296119 (+)
XLOC_007228 NA coding upstream 999488 17967953 ~ 17992665 (+)
XLOC_007234 slitrk2 coding downstream 258386 19258702 ~ 19261733 (+)
XLOC_007235 NA coding downstream 711946 19712262 ~ 19716338 (+)
XLOC_007236 CR318673.1 coding downstream 806325 19806641 ~ 19811485 (+)
XLOC_007237 fmr1 coding downstream 1156161 20156477 ~ 20191281 (+)
XLOC_007238 NA coding downstream 1267695 20268011 ~ 20269394 (+)
XLOC_007227 CU302200.1 non-coding upstream 1509999 17421668 ~ 17482154 (+)
XLOC_007240 NA non-coding downstream 1759313 20759629 ~ 20761559 (+)
XLOC_007241 NA non-coding downstream 1841228 20841544 ~ 20845040 (+)

Expression


Co-expression Network