LOC111193337


Basic Information

Item Value
gene id LOC111193337
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 16932771 ~ 16958112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU122989
GCCTGATTAGTGGGCGGGGTTTGGAAGTCCGTTGAGATGAGCAGTATAACGCCAGACCGATACAAACAGTAAGCACAGCGTCTAGTTTAGTGAATTAAAGCGTCCGAATTGCGGCAAACAGACGGTTGAACTGCATGTGTGTCAGTTATAAACACATTTCTAAGGAGACGGGAGCGTGTCTGTGGAGTGTGGTTGACTTGGTTCTTACACCAAACCATGAGACCCACTGTACCGCCCTCAACTGGTACGGCCCGGTTCTCTCACCACCCCGTTTCTTCTGAGGACCAGAACTTTCCCTGGAGAGGTCGGGAATAACGCTGTGTGACAGCTCTGAGTGATGTGCTTTTCAGCACAGAGGCTGCACATGACTGCAGGCACAAATGAGCAGCATTCTGAATAACCCTCCTTTCAGACACGTTTGTTTGTGTGGATATGAGAACCGTGACTGCAGGCAGTGCACCACGGTTCGTCCCTCGCCACATTCTCTTTGCCACTTCTGCACATGGGCCAGGAGATTGAGGAAAGCCTTCTTTGAGTCTGGCACATCTCGATACGCAGACCATCGCAGGAATTGGAACTGGCACACCACCAGCTGACCCTCCTGGAGCTAGCAATGGACAAGAAAAAATGCCCAATAATATATCACCCACTATAAATTTTTGAGTATGTTTATGGGAGTATACAGCAGCATAGAGCTTTTTGTTTGCCTAGGTTGAGCTCTCTGGAGTGCAAACTCAGCAGGGTTGAGGCCGTGATGAATGAGTCTGTGGGGAAGAGCAACACTGGAGAGATACACACAAGGCCTGATGTACTCACTCCTCTGGCCCAAAACACAAGCTTCATTAATATCCAGCCCTGAGGGACACCCCAGAGACTACCCTTGAGCACCTCAAATATTACCATGGGCACACTGACCGGTGCTCTGAGCTCTGTGCTGATAGAAAAAGCaacttcagctttttttttttttttattaaagatgtcATTTCACTAGAAACCATTTTTTACTGAGTtgcatatgcatgctgcacGTTCTACCTCCATTGCCTGCATtagccaataaaataaaatagaaaaaacctCTGCACAGATGTGAAGCTGTGGAGGGAgcgtcacagtgctgttagccaatcagaggtgatgtGTTTAAATGTCATTTATATTTGAGAGCCTAAGAGCCAAAATCTCTCGTTCTTACCTCCTCCACCTAACTAAAACAGCAGCATATGAGCACTTTCTTCACGAAAACCGCTCACAGGGTGTTCATTTTTATTAGAAACCAcctcaaaatgaatgaaaaaaacaacgAAACAACATTTTAAGCCGTTAGGAGCAGCTCATTAGTTGATAAAACAGTGTCAAACAGACGTCTCAATCAGCATGGATGATTTTACACTGATATATCAAAAACAacctgatgctgatgctgattaTTAGAGGTAGTAGGAAGTCATGAAGTATCTGTACATTTGTACTCCTaagaaaactgtatttttacttaATATATTTCTGACCACACTTGTTGCATTTCatgtatattttacataaatatattatgtaattactgctgtaaattgtaaatgtaagtCTATTAAAGCTCTG
>XR_002650447.1
CTGTACCGCCCTCAACTGGTACGGCCCGGTTCTCTCACCACCCCGTTTCTTCTGAGGACCAGAACTTTCCCTGGAGAGGTCGGGAATAACGCTGTGTGACAGCTCTGAGTGATGTGCTTTTCAGCACAGAGGCTGCACATGACTGCAGGCACAAATGAGCAGCATTCTGAATAACCCTCCTTTCAGACACGTTTGTTTGTGTGGATATGAGAACCGTGACTGCAGGTATCTGAGCAGTGCACCACGGTTCGTCCCTCGCCACATTCTCTTTGCCACTTCTGCACATGGGCCAGGAGATTGAGGAAAGCCTTCTTTGAG
>XR_002650448.1
CTGTACCGCCCTCAACTGGTACGGCCCGGTTCTCTCACCACCCCGTTTCTTCTGAGGACCAGAACTTTCCCTGGAGAGGTCGGGAATAACGCTGTGTGACAGCTCTGAGTGATGTGCTTTTCAGCACAGAGGCTGCACATGACTGCAGGCACAAATGAGCAGCATTCTGAATAACCCTCCTTTCAGACACGTTTGTTTGTGTGGATATGAGAACCGTGACTGCAGGCAGTGCACCACGGTTCGTCCCTCGCCACATTCTCTTTGCCACTTCTGCACATGGGCCAGGAGATTGAGGAAAGCCTTCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122989 True 1602 lncRNA 0.44 4 16932771 16958112
XR_002650447.1 False 318 lncRNA 0.53 3 16933837 16957657
XR_002650448.1 False 308 lncRNA 0.53 3 16933839 16957657

Neighbor

gene id symbol gene type direction distance location
LOC111188204 cpq coding downstream 124522 16793680 ~ 16808249 (-)
ctnnb1 ctnnb1,LOC107701997,LOC107570993,LOC107748497 coding downstream 240858 16679769 ~ 16691913 (-)
trak1 trak1,LOC107751889,LOC107723078 coding downstream 374029 16492965 ~ 16558742 (-)
cnot10 cnot10 coding downstream 497443 16423323 ~ 16435328 (-)
ano10 ano10,LOC107751882,LOC107601655,LOC107657579 coding downstream 639801 16254975 ~ 16292970 (-)
LOC103039922 paqr7b,LOC108443418,LOC107732831,LOC107700726,LOC107704967,LOC107587883 coding upstream 233169 17191281 ~ 17199469 (-)
LOC103040240 stmn1,stmn1b,LOC103040240,LOC107700727,LOC107597104,LOC107587743 coding upstream 243010 17201122 ~ 17206163 (-)
LOC103044151 oprd1,LOC107756112,LOC107700731,LOC107587885,LOC107735168,LOC107704878 coding upstream 496720 17454832 ~ 17466941 (-)
LOC103044436 LOC103044436,LOC108443426 coding upstream 525076 17483188 ~ 17497546 (-)
LOC103046783 fam46ba,fam46b,LOC103046783,LOC108443429,LOC107597110,LOC107587747,LOC107734389,LOC107700733 coding upstream 574562 17532674 ~ 17540201 (-)
G91432 NA non-coding downstream 114730 16782919 ~ 16818041 (-)
G91431 NA non-coding downstream 154535 16777740 ~ 16778236 (-)
G91416 NA non-coding downstream 240365 16692193 ~ 16692406 (-)
G91412 NA non-coding downstream 276589 16647903 ~ 16656182 (-)
G91396 cck non-coding downstream 451363 16480041 ~ 16481408 (-)
G91498 pkib,LOC107374466,LOC105417165,LOC108249014,LOC106510905 non-coding upstream 263926 17222038 ~ 17238172 (-)
G91510 NA non-coding upstream 309947 17268059 ~ 17268478 (-)
G91561 NA non-coding upstream 389007 17347119 ~ 17347726 (-)
G91571 NA non-coding upstream 444648 17402760 ~ 17430101 (-)
G91577 rcc1,LOC107587746,LOC107704965 non-coding upstream 482900 17441012 ~ 17444611 (-)
LOC103036883 NA other downstream 171010 16748922 ~ 16761761 (-)
pomgnt2 pomgnt2,LOC107657577,LOC107732433,LOC107551215,LOC107751881,LOC107704096,LOC107601673 other downstream 741496 16174953 ~ 16191275 (-)
G91208 NA other downstream 1166339 15759961 ~ 15766432 (-)
G91187 NA other downstream 1608674 15323300 ~ 15324097 (-)
LOC103022461 NA other downstream 1802665 15124513 ~ 15130106 (-)
G91479 NA other upstream 128133 17086245 ~ 17089037 (-)
LOC103021736 arid1a other upstream 622504 17580616 ~ 17624347 (-)
LOC103025608 LOC108434170 other upstream 1403839 18361951 ~ 18366278 (-)
G91757 NA other upstream 1480305 18438417 ~ 18441414 (-)
cenpw cenpw,LOC107668290,LOC107600551,LOC107666774 other upstream 1770570 18728682 ~ 18739390 (-)

Expression


Co-expression Network