G91484 (stmn1,stmn1b,LOC103040240,LOC107700727,LOC107374467,LOC107587743)


Basic Information

Item Value
gene id G91484
gene name stmn1,stmn1b,LOC103040240,LOC107700727,LOC107374467,LOC107587743
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 17201163 ~ 17203407 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU123033
TTAAGTACATAACATGAAATTATACCATTTCACTTTACGAAATGCAAAATGTCCTACCAAGCATTACTTGATAAGGTACAATATCTAGGCTGTTCTGTACTTAATAAATGCTATACTTTTGTAATAACAGCAAGTGGGAAGGACTAAATATTTTGAATCTtggattaaaaaccaaacatcCAAAATCTTTTACATGTAATCAGTGTGGCACTTAAAATGAGATACTGTATGCCCAGTGTGGTCCTCAATGGCAACATGCAATATGTAACTCTCTGTCGAATTGGCTCAGCATAGTGTTGTGCAGCATTTGTTTTGCATATGTGAAATTTTATCAAAATCCACTACTTTGCATTAAATAAACTGCATATCATGTCTTATTTGTcaaccttttaaaatatattcttagtTAAGACTGAAAACATGCTGTTGCATCAAACAGCACTAGGTGTCAGCAAATGCATCATCACTGACTGGAATACTGGCATGGCACTGCCAACATTACCAAAAACTCTCACAACCTTCGGATGTTTGTCCTAAACTGATGGGTATCGATTACAGGACTTTAATCAGTCAGGAAGTCTTCATCAGTCTGCTGTACACAATTACCCTGGATCTTTCTCAAAACGTTATTTATAACTTTTACACAGTTATTCTGGTAAACACTAGCCTGAAATGTGCTTATTGTTAACCACATGGACAGAGAGTTACACAGACAGGCAGACGAATGTATAAAAATTATCTTCATATTTGAACATCTACAAAAGAGGGGCAGATCCAAAGCTGTTACAATAACAAATAACTGTGCAACTTTATTAAGCCCAAAGAACTGGAGTTCTGACATAAACAGGTACAAGTCAACTTGCACAATGCAACACACAAAGTTACAGACCTATGCGTAACACAGGCATGCTTCCCTTTAGGGTAAAACACTGCTTAGTTTACAGGTCAAAAGCTGCAGTTGGACAAATCTACAGGGGCCAGTTTTTCGAAACGTATCTGAATCTTGTATTAAAATTTGGAATAAATTTGTCTTTAAATAATAAGTTAATCGAATGTGAAACAcaggtttttgttttgttaacttTAAATgggagttaaatgaacattgtatggtcattcaaacagcccagaATTTAACAGATATTTCTACAATGAAACCAAAGCTGattagtattattaaaatattggcagtgataaaaaattataacaattgaatttctaaacattttatttattaacagagtagatgaaaataaaagtattttgtcCAATAAAGTGGTTTATTAATTCGATCCCTTTTGCATTAACAGtaaattctaaaataatatttgtcCAGCAGATGGTCACATATTGTAGCAAGATCTAGAAATCCTTATCATGTGATATGTGGACCAATGTTATCCAGTCTGAATATGTTCTGGAAAAACTGGGACAACATCTATGAGATCATTTAGATTATTGATAGAAAAAGGTGGAATCTAATTATCCAGACAATTTGTATAAGAATTTTAAGCTTTGAAAAACTGGCCCCAGGTGATGGGGATGCAAAATAGATCTGAACATGAAGAGATGAAAATAACATTGTGCACCTGCTTCTCCCCTAGTCAGATAAAAAAGTGTCAATAACACAAAACCGAACAAATAATACTGGCCATAatggaacaaaaataaatctttggaTACGTAAAAAACCCAATACTATTCCCTAAAGTGAATagaaccaaaaataaaaagacgCAAAACTCAGTTGTCCTCCTCGCCTCCGTCCTCTTTTGTCTCTTTGTTCTTTCGGACTTCTTCAATTTTCTTGTccTCTCCTTGAACTTCTCGTTCATTGCGGCCATCTGTTTTGTGcggttttctttgtttgcttccATTTTCAGGTTGAGTTTCTCCTCTGCCATCTTGCTGAAGTTGTTGTTCTCCTCCATTGCTTTCTGGAGAACCTCCTTCTCATGCTCTCGCTTCTCAGCCAAGTGTTTTAGGACCTCTGCCTCATGATTCTGATGAGAATGGATAGacaaataaacagcaataagaAATGATAATAATTTTAGGAGAAAATATAAGATCTGTTCAGAATGGTGCTGTTCAGCAAAAAC

Function

symbol description
stmn1b Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Is expressed in nervous system; neural crest; neural tube; and trigeminal placode. Orthologous to human STMN1 (stathmin 1).
stmn1 Enables tubulin binding activity. Involved in several processes, including establishment of skin barrier; negative regulation of signal transduction; and negative regulation of supramolecular fiber organization. Acts upstream of or within microtubule depolymerization and mitotic spindle organization. Located in extracellular exosome. Biomarker of hepatocellular carcinoma.

NR:

description
stathmin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123033 True 2102 lncRNA 0.35 2 17201163 17203407

Neighbor

gene id symbol gene type direction distance location
LOC103040229 ptprub,LOC108441315,LOC107704844 coding upstream 259756 16829220 ~ 16941407 (+)
cmtm8 NA coding upstream 452463 16745572 ~ 16748700 (+)
ulk4 ulk4,LOC107668185,LOC107564876 coding upstream 520604 16558876 ~ 16680559 (+)
LOC103035015 cck coding upstream 719752 16435340 ~ 16481411 (+)
tcaim tcaim,LOC107751885,LOC107704100,LOC107601675 coding upstream 818774 16373712 ~ 16382389 (+)
LOC103041278 serinc2l,LOC103041278,LOC107587884,LOC108269842,LOC108443421,LOC107732828,LOC107704843,LOC107597105 coding downstream 37145 17240552 ~ 17252697 (+)
hivep3 hivep3 coding downstream 68707 17272114 ~ 17350944 (+)
LOC111193338 NA coding downstream 158726 17362133 ~ 17366470 (+)
LOC103041872 phactr4 coding downstream 180557 17383964 ~ 17438199 (+)
dnali1 NA coding downstream 430778 17634185 ~ 17637610 (+)
G91487 paqr7b,LOC108443418,LOC107732831,LOC107704967,LOC107700726,LOC107587883 non-coding upstream 4175 17191603 ~ 17196988 (+)
G91486 NA non-coding upstream 9580 17191281 ~ 17191583 (+)
G91385 NA non-coding upstream 393167 16778652 ~ 16807996 (+)
LOC103037726 NA non-coding upstream 414533 16692029 ~ 16786630 (+)
G91366 ctnnb1 non-coding upstream 509227 16685538 ~ 16691936 (+)
G91509 NA non-coding downstream 64709 17268116 ~ 17268417 (+)
G91513 NA non-coding downstream 72264 17275671 ~ 17279748 (+)
G91512 NA non-coding downstream 93414 17296821 ~ 17298245 (+)
G91534 NA non-coding downstream 266624 17470031 ~ 17470245 (+)
G91537 NA non-coding downstream 282058 17485465 ~ 17486028 (+)
trim71 trim71,LOC107751884,LOC107657583,LOC107601676,LOC107723073,LOC107551222 other upstream 781783 16395214 ~ 16419380 (+)
LOC103025288 LOC107578870,LOC108428970,LOC106578494,LOC108273189 other upstream 1918108 15276142 ~ 15283055 (+)
alg14 alg14,LOC107739035 other upstream 1984655 15160215 ~ 15216508 (+)
LOC103045856 NA other upstream 2427796 14662657 ~ 14773367 (+)
LOC103029466 c1ql3,LOC103029466,LOC108428918,LOC107677106,LOC107599742,LOC107555006 other upstream 2548881 14645798 ~ 14652282 (+)
rcc1 NA other downstream 155432 17358839 ~ 17447933 (+)
G91678 NA other downstream 708494 17911901 ~ 17912443 (+)
G91728 NA other downstream 1144620 18348027 ~ 18361095 (+)
G91748 NA other downstream 1197081 18400488 ~ 18421263 (+)
G91760 NA other downstream 1288273 18491680 ~ 18492072 (+)

Expression


Co-expression Network