XLOC_007242 (lygl1)


Basic Information

Item Value
gene id XLOC_007242
gene name lygl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 20893065 ~ 20898499 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014283
TTTCAGCTGCAATCACAATAGCACAACATTCAGTGGACTGACTAGTCACAGCTcgaacattttgttttgttcacaGCAGCTTTGAGTCATcatggGCATTCCGGTGATACTTACCATGTATTTTCTAGCATGCATTTATGGAGATATCATGAAAATAGACACCACTGGGGCATCAGAGGTGACAGCAAAACAGGACAAGTTAACTGTAAAGGGAGTTGAAGCCTCTAAAAAACTGGCTGAGCATGATCTGGCCCGAATGGAACAATACAAGTCCAAAATCCTCAAAGTTGCCCGAGCAAAGCAGATGGACCCGGCTGTGATTGCTGCCATCATATCCAGAGAGTCCCGGGCTGGAGCGGCACTGAAGGATGGATGGGGTGACCACGGCAATGGCTTTGGTCTCATGCAGGTTGACAAACGCTACCACAAACTGGTAGGTGCTTGGGACAGCGAGGAACATCTCACACAAGGAACTGAGATACTCATTGGTTATATCAAAGATATTAAAGCAAAGTTTCCCACATGGACCAAGGAGCAATGCTTTAAAGGTGGAATATCAGCGTATAATGCAGGTGTGAAGAACGTGCAAACATATGAGCGCATGGATGTGGGCACCACAGGCGGTGATTACGCTAATGATGTTGTTGCCCGAGCCCAGTGGTTCAAAAGTAAAGGTTACTAAGGAATAAATGTAGTCTAATGCTATTTTTAATAGCTCACTCTAACCACTGATCAcagttttatactttattttgtatttgctggaaataaataaaatgtctttat

Function

symbol description
lygl1 Predicted to enable lysozyme activity. Predicted to be involved in defense response to Gram-positive bacterium. Predicted to act upstream of or within cell wall macromolecule catabolic process and peptidoglycan catabolic process. Predicted to be active in extracellular region. Is expressed in macrophage. Orthologous to several human genes including LYG2 (lysozyme g2).

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process
GO:0009253 peptidoglycan catabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0050830 defense response to Gram-positive bacterium biological_process
GO:0005576 extracellular region cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-461 Predicted to enable lysozyme activity. Predicted to be involved in defense response to Gram-positive bacterium. Predicted to act upstream of or within cell wall macromolecule catabolic process and peptidoglycan catabolic process. Predicted to be active in extracellular region. Is expressed in macrophage. Orthologous to several human genes including LYG2 (lysozyme g2).

Ensembl:

ensembl_id ENSDARG00000056874

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014283 True 786 mRNA 0.44 5 20893065 20898499

Neighbor

gene id symbol gene type direction distance location
XLOC_007241 NA coding upstream 48025 20841544 ~ 20845040 (+)
XLOC_007240 NA coding upstream 131506 20759629 ~ 20761559 (+)
XLOC_007239 aff2 coding upstream 155963 20342553 ~ 20737102 (+)
XLOC_007238 NA coding upstream 623671 20268011 ~ 20269394 (+)
XLOC_007237 fmr1 coding upstream 701784 20156477 ~ 20191281 (+)
XLOC_007243 zgc:162941 coding downstream 2490 20900989 ~ 20908036 (+)
XLOC_007244 lygl2 coding downstream 12811 20911310 ~ 20917866 (+)
XLOC_007245 zgc:66433 coding downstream 20202 20918701 ~ 21001756 (+)
XLOC_007246 pimr195 coding downstream 106873 21005372 ~ 21007653 (+)
XLOC_007247 pimr194 coding downstream 109458 21007957 ~ 21010327 (+)
XLOC_007236 CR318673.1 non-coding upstream 1081580 19806641 ~ 19811485 (+)
XLOC_007235 NA non-coding upstream 1176727 19712262 ~ 19716338 (+)
XLOC_007254 NA non-coding downstream 394615 21293114 ~ 21293498 (+)
XLOC_007255 ndufs8b non-coding downstream 772608 21671107 ~ 21678917 (+)
XLOC_007259 NA non-coding downstream 879058 21777557 ~ 21777836 (+)
XLOC_007268 NA non-coding downstream 1230597 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 1908999 22807498 ~ 22811997 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000110_03030140_03031812 LYGL1 coding CI01000110 null 3030140 ~ 3031918 (+)