LOC103032846


Basic Information

Item Value
gene id LOC103032846
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 159300 ~ 160048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC103032846
TGGCAAAGTATATCCCTGTAGTTCAGCCATGATTTCTGTGTTTCTGCTACTCCTGCTTATCAGCATATCCAGCGTTCAGTGTGAAGAACTGACTCAGCCAAGTGCTTTAAGCATCCGTCCTGGCCAATCACTGACCATCACCTGCAGAGTCTCGTACTCAGTGTCCAGCTACGGCACAGGATGGATCCGGCAGCCTGCAGGAAAAGGTCTGGAGTGGGTCTCCTATGTGAGCACTGGTGGAAGCCTCTACTATAAAGATTCTCTAAAGAGCAAATTTACTGCTTCCAGAGAAACATCCAGCAACACAATAACATTAACAGGGCAGAATCTGCAGACTGAGGACACAGCTGTGTATTACTGTGCTCGACAACCACAGCTGTTCATGTTAACCAGAGCAACGTACAAAAACCTCCTCAGTCAGGAGAGGAATACGCAGTTATGTTGTAGATGA
>TU384804
AAGTATATCCCTGTAGTTCAGCCATGATTTCTGTGTTTCTGCTACTCCTGCTTATCAGCATATCCAGCGTTCAGTGTGAAGAACTGACTCAGCCAAGTGCTTTAAGCATCCGTCCTGGCCAATCACTGACCATCACCTGCAGAGTCTCGTACTCAGTGTCCAGCTACGGCACAGGATGGATCCGGCAGCCTGCAGGAAAAGGTCTGGAGTGGGTCTCCTATGTGAGCACTGGTGGAAGCCTCTACTATAAAGATTCTCTAAAGAGCAAATTTACTGCTTCCAGAGAAACATCCAGCAACACAATAACATTAACAGGGCAGAATCTGCAGACTGAGGACACAGCTGTGTATTACTGTGCTCGACAACCACAGCTGTTCATGTTAACCAGAGCAACGTACAAAAACCTCCTCAGTCAGGAGAGGAATACGCAGTTATGTTGTAGATGAACACAGGGGAACAAGTCACTTTTTATTGcactttattaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC103032846 False 451 V_segment 0.47 2 159300 160007
TU384804 True 487 TUCP 0.46 2 159305 160048

Neighbor

gene id symbol gene type direction distance location
LOC107197483 NA coding upstream 143159 15658 ~ 16141 (+)
LOC111190154 NA coding downstream 73764 233812 ~ 236578 (+)
LOC103041119 NA coding downstream 78726 238774 ~ 239350 (+)
LOC103040202 NA coding downstream 80300 240348 ~ 244545 (+)
LOC111190155 NA coding downstream 86532 246580 ~ 258409 (+)
LOC111190159 NA coding downstream 126011 286059 ~ 287629 (+)
G280298 NA non-coding upstream 119632 38119 ~ 39668 (+)
G280297 NA non-coding upstream 121644 36371 ~ 37656 (+)
G280290 NA non-coding upstream 127767 22417 ~ 31533 (+)
G280332 NA non-coding downstream 31690 191738 ~ 247699 (+)
G280334 NA non-coding downstream 47526 207574 ~ 207855 (+)
G280338 NA non-coding downstream 80306 240354 ~ 249052 (+)
G280345 NA non-coding downstream 92615 252663 ~ 254221 (+)
LOC111190165 NA non-coding downstream 100829 260877 ~ 261488 (+)
LOC111190149 NA other upstream 8993 149657 ~ 150307 (+)
LOC111190136 NA other upstream 13226 145407 ~ 146074 (+)
LOC111190148 NA other upstream 19659 137550 ~ 139641 (+)
LOC111190131 NA other upstream 24631 134179 ~ 134669 (+)
LOC111190129 NA other upstream 27146 131584 ~ 132154 (+)
LOC111190150 NA other downstream 5194 165242 ~ 165724 (+)
LOC111190145 NA other downstream 11213 171261 ~ 171809 (+)
LOC111190128 NA other downstream 15133 175181 ~ 175779 (+)
LOC111190164 NA other downstream 17486 177534 ~ 178182 (+)
G280328 NA other downstream 19976 180024 ~ 226732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026515 ighv1-4 coding NC_007114.7 CM002887.2 33963247 ~ 34095221 (-)
grasscarp (Ctenopharyngodon idella) CI01000288_00050351_00060483 IGHV5-5 misc CI01000288 null 49830 ~ 60786 (+)
eurasian perch (Perca fluviatilis) trnar-ucg_4 NA coding NC_053118.1 CM020915.1 22024 ~ 22096 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117598913 NA misc NC_047607.1 CM018553.1 22107604 ~ 22108104 (+)
tiger barb (Puntius tetrazona) LOC122332140 ighm,ighv5-5,ighv5-4,ighv5-8 coding NC_056701.1 CM032070.1 13086375 ~ 13087267 (-)