LOC111190145


Basic Information

Item Value
gene id LOC111190145
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 171261 ~ 171809 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111190145
AGATCAGTGAGCATCTCCTCAAGGTGCAGCttccaccaccaacaccaccatgttctccacactgatccatctactgctgctactaacaGCTGCTGCATCCTGGGTTGATTGTATAGAGCTGGATCAGCCTGCAGTCATGGTTGTTAAACCTGGAGAATCTTTCTCCCTCTCCTGTAAGATCACTGGATATTCAGCTGTAGGAGGCTGTACTAACTGGATACGACACTCATCAGGAAAAGCTCCAGAATGGGTTGGATGGTTCTGCAGCACAAGTGACACTGGagccaaaaacacactgaacagCAAGATCAGTTTTACTGGAGAATCTTCCAgcaacacagtgtttttacaggGGCAGAACTTCCAGTCTGaggacagcgctgtgtattACTGCGCTCGGAACACACAGTGATACAGTCTGCTGTAGAGGCTGTACAAAAACCCCCAACTTCCCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111190145 True 458 V_segment 0.48 2 171261 171809

Neighbor

gene id symbol gene type direction distance location
LOC107197483 NA coding upstream 155120 15658 ~ 16141 (+)
LOC111190154 NA coding downstream 62003 233812 ~ 236578 (+)
LOC103041119 NA coding downstream 66965 238774 ~ 239350 (+)
LOC103040202 NA coding downstream 68539 240348 ~ 244545 (+)
LOC111190155 NA coding downstream 74771 246580 ~ 258409 (+)
LOC111190159 NA coding downstream 114250 286059 ~ 287629 (+)
G280298 NA non-coding upstream 131593 38119 ~ 39668 (+)
G280297 NA non-coding upstream 133605 36371 ~ 37656 (+)
G280290 NA non-coding upstream 139728 22417 ~ 31533 (+)
G280332 NA non-coding downstream 19929 191738 ~ 247699 (+)
G280334 NA non-coding downstream 35765 207574 ~ 207855 (+)
G280338 NA non-coding downstream 68545 240354 ~ 249052 (+)
G280345 NA non-coding downstream 80854 252663 ~ 254221 (+)
LOC111190165 NA non-coding downstream 89068 260877 ~ 261488 (+)
LOC111190150 NA other upstream 5537 165242 ~ 165724 (+)
LOC103032846 NA other upstream 11213 159300 ~ 160048 (+)
LOC111190149 NA other upstream 20954 149657 ~ 150307 (+)
LOC111190136 NA other upstream 25187 145407 ~ 146074 (+)
LOC111190148 NA other upstream 31620 137550 ~ 139641 (+)
LOC111190128 NA other downstream 3372 175181 ~ 175779 (+)
LOC111190164 NA other downstream 5725 177534 ~ 178182 (+)
G280328 NA other downstream 8215 180024 ~ 226732 (+)
LOC111190146 NA other downstream 8219 180028 ~ 181015 (+)
LOC111190163 NA other downstream 13138 184947 ~ 185506 (+)

Expression


Co-expression Network