G280329


Basic Information

Item Value
gene id G280329
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 199566 ~ 270848 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU384811
CTGAGAGAAGATCCCACAGATCCAACTTCAACACAAACCATGTTCTCTACAGCTCTACTGATCCTGTGGGTTTCTGTATCCTATGTTCACAGTTATGAACTGACTCAGCCTGGTTCTATGACGGTTCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCATATTCTGTTACAAGCTATGAAACAAATTGGATCAGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGATACATTGGTAGCAGTGGGGGCACAGCTTACAGCGATAAACTGAAAAACAAGTTCAGCATCTCCAGAGACACTGGAACTAACACAATAACATTACAAGGACAGAATCTGCAGACTGAAGATACAGCTGTGTATTACTGTGCGAG
>TU384812
CATCCCACAGCTTCCCATCTCTCATCATGTTCTCTACAACTCTACTGCTCCTGCTAGCAGCTGCTACATcagGTGTTCACAGTTATGAACTGACTCAACCTGGTTCCATGATGGTCCAACCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCTTATTCAGTTACTGGCTATACTACATTTTGGATCAAACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGTTATATTAATGGTGGTGGGAGCACAGCTTACAGTGATAAACTGAAAAACAAGTTCAGCATCTCCAGAGACACTGGAACTAAAACAATAACATTACAAGGACAGAATCTGCAGACTGAAGATACAgctgtgtattactgcgcaCGAGAA
>TU384813
CTGCCCTCTATTTAGGAGATGATAcactctctattacactctgAGAACTGAGAGAAGATCCCACAGATCCAACTCCAACACCAACCATGTTCTCTACAGCTCTACTGATCCTGTGGGTTTCTGTATCCTGTGTTAACAGTATTGAACTGACTCAGCCTGGTTCTATGATGGTTCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCATATTCAGTTACTAATG
>TU384814
CTGCCCTCTATTTAGGAGATGATAcactctctattacactctgAGAACTGAGAGAAGATCCCACAGATCCAACTCCAACACCAACCATGTTCTCTACAGCTCTACTGATCCTGTGGGTTTCTGTATCCTGTGTTAACAGTATTGAACTGACTCAGCCTGGTTCTATGATGGTTCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCTTATTCAGTTACAAGTGAATGGACAGCCTGGATCAGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGAAATATCTATAGAGATGGTAGCACAGACTACAGCGATAAACTGAAAAACAAGTTCAGCATCTCCAGAGACACTGGAACTAACACAATAACATTACAAGGACAGAACCTGCAGACTGAAGATACAGCTGTGTATTACTGCGCGAGACTCT
>TU384815
CTGAGAGAAGATCCCACAGATCCAACTTCAACACAAACCATGTTCTCTACAGCTCTACTGATCCTGTGGGTTTCTGTATCCTATGTTCACAGTTATGAACTGACTCAGCCTGGTTCTATGACGGTTCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCATATTCTGTTACAAGCTATGAAACAAATTGGATCAGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGATACATTGGTAGCAGTGGGGGCACAGGTTACAGCGATAAACTGAAAAACAAGTTCAGCATCTCCAGAGACACTGGAACTAACACAATAACATTACAAGGACAGAACCTGCAGACTGAAGATACAGCTGTGTATTACTGTGCAAGACTCT
>TU384818
CTGAGAGAAGATCCCACAGATCCAACTTCAACACAAACCATGTTCTCTACAGCTCTACTGATCCTGTGGGTTTCTGTATCCTATGTTCACAGTTATGAACTGACTCAGCCTGGTTCTATGACGGTTCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCATATTCAGTTACAAGCTGGAGCACAGGTTATATCAGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGAAATATCTACATGGATGGTAGCACAGACTacagtaataaactaaaaaacaagTTCAGCATCTCCAGAGACACTGGAACTAACACAATAACATTACAAGGACAGAACCTGCAGACTGAAGATACAGCTGTGTATTACTGTGCAAGACTCT
>TU384819
GGCAGAAAAGATCCTGCAGGTCCAACATCAACACAAACCATGTTCTCTACAgctctgctgctcctgctggCAGCTGCTTCCTGTGTTCACAGTGAAGAACTGACTCAGCCTGGATCCATGATCATCCGTCCAGGTCAGAGTCTGACCATCAACTGTAAAGTTTCATATTCAGTTTCTAGCTATTCTACAGCCTGGATCAGACAACCTGCAGGAAAAGCTCTGGAGTGGATTGGATACATTGGTAGCAGTGGGGGCACAGCTTACAGCGATAAACTGAAAAACAAGTTCAGCATCTCCAGAGACACTGGAACTAACACAATAACATTACAAGGACAGAATCTGCAGACTGAAGATACAGCTGTGTATTACTGCGCGAGACTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU384811 False 377 TUCP 0.44 3 228580 261418
TU384812 False 371 TUCP 0.43 2 215923 219687
TU384813 False 228 lncRNA 0.43 2 260871 261218
TU384814 True 429 TUCP 0.44 3 260871 270848
TU384815 False 382 TUCP 0.43 3 228580 236570
TU384818 False 382 TUCP 0.42 3 228580 236570
TU384819 False 382 TUCP 0.47 5 199566 270848

Neighbor

gene id symbol gene type direction distance location
LOC107197483 NA coding upstream 183425 15658 ~ 16141 (+)
LOC111190159 NA coding downstream 15211 286059 ~ 287629 (+)
LOC111190133 NA coding downstream 17731 288579 ~ 289221 (+)
LOC111190160 NA coding downstream 19485 290333 ~ 290884 (+)
LOC111190137 NA coding downstream 23456 294304 ~ 294920 (+)
LOC107197420 NA coding downstream 28821 299669 ~ 300531 (+)
G280298 NA non-coding upstream 159898 38119 ~ 39668 (+)
G280297 NA non-coding upstream 161910 36371 ~ 37656 (+)
G280290 NA non-coding upstream 168033 22417 ~ 31533 (+)
G280350 NA non-coding downstream 10208 281056 ~ 281292 (+)
LOC103033165 NA other upstream 2574 196391 ~ 196992 (+)
G280333 NA other upstream 3929 195171 ~ 195637 (+)
LOC111190151 NA other upstream 6300 192775 ~ 193266 (+)
LOC111190163 NA other upstream 14060 184947 ~ 185506 (+)
LOC111190146 NA other upstream 18551 180028 ~ 181015 (+)
LOC111190157 NA other downstream 1472 272320 ~ 276225 (+)
LOC111190162 NA other downstream 11427 282275 ~ 282898 (+)
G280341 NA other downstream 13594 284442 ~ 286535 (+)
LOC111190158 NA other downstream 13615 284463 ~ 285888 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G23770 NA non-coding CI01000003 null 2139288 ~ 2139544 (+)