XLOC_007250 (aldob)


Basic Information

Item Value
gene id XLOC_007250
gene name aldob
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21106444 ~ 21121199 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014299
ACCACCCGTTCACCGCCTCAGCCAATGGCGTTACCGGAGGCTGATCACGCCCGTTCACATCACGTCTGTCCAGCCTCTGCTCTTAGCCCAAATAAATAGCGACTGTTCCAATCGTTCAGTCCCGATTCACTAAAATCCATCGGCGTCACAGAGGAGAGGCCACTGCATACACTTTTAATCCCGTGTGCTGCTCACCACCAATCCACTCAACATGACACACCAGTTTCCAGCTCTCTCTACGGAGCAGAAGAAGGAGCTTGCCACAATTGCTGAGCGCATTGTGGCTCCTGGAAAAGGCATCTTGGCTGCAGATGAATCCACAGGCACCATGGCGAAGCGTTTCCAGAAGATAAATGTAGAGAACACTGAAGAAAATCGCCGTAGCTTTCGCGACCTTCTCTTCTCAGTAGATGATTCCATCTCTGAAAGCATTGGTGGGGTCATCTTGTTCCATGAAACACTGTACCAGAAGTCAGACAAAGGAGTTCTCTTCCCAAAGGTCATCAAGGACAAGGGCATCGTAGTTGGTATCAAGGTGGACAAAGGCACAGCAGGACTGGCTGGTACAGATGGAGAGACTACCACACAGGGGTTGGACGGTCTGTCTGAACGCTGTGCCCAGTACAAGAAGGATGGCTGTGACTTTGCCAAGTGGCGTTGTGTGCTTAAAATCTCTGACAGTTGCCCCTCCGCTCTTGGAATTGCTGAAAATGCCAATGTCCTTGCCCGATATGCCAGCATTTGCCAACAGAATGGCCTGGTGCCTATTGTAGAGCCTGAGATCCTCCCAGACGGAGATCATGATCTGAAACAATGCCAGTATGCCACTGAGAAGGTCCTAGCGGCTGTGTACAAGGCTCTCTCTGATCACCACGTTTATCTGGAGGGAACTCTGCTCAAACCAAACATGGTCACCGCTGGACACTCCTGCACCAAGAAGTACACCCCTTTAGAGGTTGCCATGGCCACAGTCACTGCTCTCAGACGCACTGTGCCTGCTGCTGTACCAGGAATCTGCTTTCTCTCTGGGGGTCAGAGTGAGGAAGAGGCCTCTCTGAATCTGAATGCCATGAACCAGCTGTCCCTGCACAGACCCTGGAAGCTGAGCTTCTCTTATGGCCGTGCTCTCCAGGCATCGGCACTTTCAGCCTGGAAGGGACAAGCAGCGAACAAGAAGGCTTCACAGGACGCCTTCGTTACACGTGCCAAGATTAATAGTCTTGCATCAAAAGGTGAATACAAACCCTCAGGTCAGGCTGGCCAAGCATCCACACAGTCTCTATTTACTGCAAGCTATACCTACTAAACTCAACAACAAACAGCAAAGTGTGCTGGACAATACAAAAAATGAGTGAAGATGCCAAAGTTATTCAAGATGACTTTATGACACACTATAAATTGTACAAATATGTTCATGTACCTCTGCCAAATCTGACTCAACTAGACACTGTTTAACCTGGATTAGATTTAGTTTTCATGCATGTGCACCTACTGATgcttttcattttgaaataaaaaatggttttatttgA
>TCONS_00014300
CCGATTCACTAAAATCCATCGGCGTCACAGAGGAGAGGCCACTGCATACACTTTTAATCCCGTGTGCTGCTCACCACCAATCCACTCAACATGACACACCAGTTTCCAGCTCTCTCTACGGAGCAGAAGAAGGAGCTTGCCACAATTGCTGAGCGCATTGTGGCTCCTGGAAAAGGCATCTTGGCTGCAGATGAATCCACAGGCACCATGGCGAAGCGTTTCCAGAAGATAAATGTAGAGAACACTGAAGAAAATCGCCGTAGCTTTCGCGACCTTCTCTTCTCAGTAGATGATTCCATCTCTGAAAGCATTGGTGGGGTCATCTTGTTCCATGAAACACTGTACCAGAAGTCAGACAAAGGAGTTCTCTTCCCAAAGGTCATCAAGGACAAGGGCATCGTAGTTGGTATCAAGGTGGACAAAGGCACAGCAGGACTGGCTGGTACAGATGGAGAGACTACCACACAGGGGTTGGACGGTCTGTCTGAACGCTGTGCCCAGTACAAGAAGGATGGCTGTGACTTTGCCAAGTGGCGTTGTGTGCTTAAAATCTCTGACAGTTGCCCCTCCGCTCTTGGAATTGCTGAAAATGCCAATGTCCTTGCCCGATATGCCAGCATTTGCCAACAGGTGTGTCTAACAGAATGTTCTTAGTccatgtgagtttttttttctcatttaacaaCTTAACACCCTTTttt
>TCONS_00014301
CTAAAATCCATCGGCGTCACAGAGGAGAGGCCACTGCATACACTTTTAATCCCGTGTGCTGCTCACCACCAATCCACTCAACATGACACACCAGTTTCCAGCTCTCTCTACGGAGCAGAAGAAGGAGCTTGCCACAATTGCTGAGCGCATTGTGGCTCCTGGAAAAGGCATCTTGGCTGCAGATGAATCCACAGGCACCATGGCGAAGCGTTTCCAGAAGATAAATGTAGAGAACACTGAAGAAAATCGCCGTAGCTTTCGCGACCTTCTCTTCTCAGTAGATGATTCCATCTCTGAAAGCATTGGTGGGGTCATCTTGTTCCATGAAACACTGTACCAGAAGTCAGACAAAGGAGTTCTCTTCCCAAAGACCCTGGAAGCTGAGCTTCTCTTATGGCCGTGCTCTCCAGGCATCGGCACTTTCAGCCTGGAAGGGACAAGCAGCGAACAAGAAGGCTTCACAGGACGCCTTCGTTACACGTGCCAAGATTAATAGTCTTGCATCAAAAGGTGAATACAAACCCTCAGGTCAGGCTGGCCAAGCATCCACACAGTCTCTATTTACTGCAAGCTATACCTACTAAACTCAACAACAAACAGCAAAGTGTGCTGGACAATACAAAAAATGAGTGAAGATGCCAAAGTTATTCAAGATGACTTTATGACACACTATAAATTGTACAAATATGTTCATGTACCTCTGCCAAATCTGACTCAACTAGACACTGTTTAACCTGGATTAGATTTAGTTTTCATGCATGTGCACCTACTGATgcttttcattttgaaataaaaaatggttttatttgA
>TCONS_00014302
GTGTTTGACTTAATGGGTGCAAAAATGCACGGAAAACTGCAAATCTGCAAGATGACTGAACCCTGGACTTGTTTGTTCAGTAGGAGGAGTCAGCGTGTTTCTCCGGACTAAAGTTCAATAGATTTGGCAAATATTTACAGGCAGGCGTGTGTAACCCACATGACACACCAGTTTCCAGCTCTCTCTACGGAGCAGAAGAAGGAGCTTGCCACAATTGCTGAGCGCATTGTGGCTCCTGGAAAAGGCATCTTGGCTGCAGATGAATCCACAGGCACCATGGCGAAGCGTTTCCAGAAGATAAATGTAGAGAACACTGAAGAAAATCGCCGTAGCTTTCGCGACCTTCTCTTCTCAGTAGATGATTCCATCTCTGAAAGCATTGGTGGGGTCATCTTGTTCCATGAAACACTGTACCAGAAGTCAGACAAAGGAGTTCTCTTCCCAAAGGTCATCAAGGACAAGGGCATCGTAGTTGGTATCAAGGTGGACAAAGGCACAGCAGGACTGGCTGGTACAGATGGAGAGACTACCACACAGGGGTTGGACGGTCTGTCTGAACGCTGTGCCCAGTACAAGAAGGATGGCTGTGACTTTGCCAAGTGGCGTTGTGTGCTTAAAATCTCTGACAGTTGCCCCTCCGCTCTTGGAATTGCTGAAAATGCCAATGTCCTTGCCCGATATGCCAGCATTTGCCAACAGAATGGCCTGGTGCCTATTGTAGAGCCTGAGATCCTCCCAGACGGAGATCATGATCTGAAACAATGCCAGTATGCCACTGAGAAG
>TCONS_00014303
ATAGATTTGGCAAATATTTACAGGCAGGCGTGTGTAACCCAGTGAGCTGAATAATTGATGTTCTGTTAATGACatgtttcgttttgttttttactgaagTTTGACTTTTCTCTCCCCCTCAGCATGACACACCAGTTTCCAGCTCTCTCTACGGAGCAGAAGAAGGAGCTTGCCACAATTGCTGAGCGCATTGTGGCTCCTGGAAAAGGCATCTTGGCTGCAGATGAATCCACAGGCACCATGGCGAAGCGTTTCCAGAAGATAAATGTAGAGAACACTGAAGAAAATCGCCGTAGCTTTCGCGACCTTCTCTTCTCAGTAGATGATTCCATCTCTGAAAGCATTGGTGGGGTCATCTTGTTCCATGAAACACTGTACCAGAAGTCAGACAAAGGAGTTCTCTTCCCAAAGGTCATCAAGGACAAGGGCATCGTAGTTGGTATCAAGGTGGACAAAGGCACAGCAGGACTGGCTGGTACAGATGGAGAGACTACCACACAGGGGTTGGACGGTCTGTCTGAACGCTGTGCCCAGTACAAGAAGGATGGCTGTGACTTTGCCAAGTGGCGTTGTGTGCTTAAAATCTCTGACAGTTGCCCCTCCGCTCTTGGAATTGCTGAAAATGCCAATGTCCTTGCCCGATATGCCAGCATTTGCCAACAGAATGGCCTGGTGCCTATTGTAGAGCCTGAGATCCTCCCAGACGGAGATCATGATCTGAAACAATGCCAGTATGCCACTGAGAAGGTCCTAGCGGCTGTGTACAAGGCTCTCTCTGATCACCACGTTTATCTGGAGGGAACTCTGCTCAAACCAAACATGGTCACCGCTGGACACTCCTGCACCAAGAAGTACACCCCTTTAGAGGTTGCCATGGCCACAGTCACTGCTCTCAGACGCACTGTGCCTGCTGCTGTACCAGGAATCTGCTTTCTCTCTGGGGGTCAGAGTGAGGAAGAGGCCTCTCTGAATCTGAATG
>TCONS_00014304
CATGACACACCAGTTTCCAGCTCTCTCTACGGAGCAGAAGAAGGAGCTTGCCACAATTGCTGAGCGCATTGTGGCTCCTGGAAAAGGCATCTTGGCTGCAGATGAATCCACAGGCACCATGGCGAAGCGTTTCCAGAAGATAAATGTAGAGAACACTGAAGAAAATCGCCGTAGCTTTCGCGACCTTCTCTTCTCAGTAGATGATTCCATCTCTGAAAGCATTGGTGGGGTCATCTTGTTCCATGAAACACTGTACCAGAAGTCAGACAAAGGAGTTCTCTTCCCAAAGGTCATCAAGGACAAGGGCATCGTAGTTGGTATCAAGGTGGACAAAGGCACAGCAGGACTGGCTGGTACAGATGGAGAGACTACCACACAGGGGTTGGACGGTCTGTCTGAACGCTGTGCCCAGTACAAGAAGGATGGCTGTGACTTTGCCAAGTGGCGTTGTGTGCTTAAAATCTCTGACAGTTGCCCCTCCGCTCTTGGAATTGCTGAAAATGCCAATGTCCTTGCCCGATATGCCAGCATTTGCCAACAGAATGGCCTGGTGCCTATTGTAGAGCCTGAGATCCTCCCAGACGGAGATCATGATCTGAAACAATGCCAGTATGCCACTGAGAAGGTCCTAGCGGCTGTGTACAAGGCTCTCTCTGATCACCACGTTTATCTGGAGGGAACTCTGCTCAAACCAAACATGGTCACCGCTGGACACTCCTGCACCAAGAAGTACACCCCTTTAGAGGTTGCCATGGCCACAGTCACTGCTCTCAGACGCACTGTGCCTGCTGCTGTACCAGGAATCTGCTTTCTCTCTGGGGGTCAGAGTGAGGAAGAGGCCTCTCTGAATCTGAATGCCATGAACCAGCTGTCCCTGCACAGACCCTGGAAGCTGAGCTTCTCTTATGGCCGTGCTCTCCAGGCATCGGCACTTTCAGCCTGGAAGGGACAAGCAGCGAACAAGAAGGCTTCACAGGACGCCTTCGTTACACGTGCCAAGATTAATAGTCTTGCATCAAAAGGAGAAGCTCCATATTCAAGAAGTTTGGAAACCATGTGCTTGTCCCTCTTTTCCACAGCTGCATGTAAAGCAGTTTGTCCATTGTAATCATCCTGGTTCATGTCTGCACCGGCTAAATACCACGCATGCAAAAGCTTACAGTCCTTAAGCCAAACTGCCCTAAATTAAAAAGCATAGTTGAATGCAAAGAACCACAACAGACTGACAAGTTCATCTGTAGTTTAGAAAGACTCACTTTATAAGTTCAATGCCAACTTGCACAGGCTTTAGAATTACTATTGCTCCTTCCTTGTTCAAGATCTTGATCACATCAATGTGTCTGGCAATTGGGTAGACGATCGGTGCATAAATGTCACATTCATTTGATTTGTGTTGTAAAAACATCTTAAAGGTCCTGtcaaatgctttgaaatgtgcagtttttatttatagTAGTCCCTGcgcttttaaaaaacagccaatagtgttttatttttatcacagctcttccAGTGAGAGTGGATGGTCAAGTGCATCAGATGAAAAAaagccatagatatttacatgagatgtcgcctacgctgttgttgtttatcagaagaacTGCACcaatagagccaccattttagtacagggtagcgcttttttcaaatgaatgtgggaccaaggtacagtaAAAAAGTGACCATCCAGAGCCATAGATatgtaaacatatataaatatatctatgaTCGGAATTTTTCCTAGTGGTTagtgtgcaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatgtatatatatatatatatatatttttttttttttttttttaaattgggaaaattataattttacatcactttctACATCAATGGATAAGCGACCGGACAGGCATTGccgacaaaaagcttgtgtttgtgtgcatggaaatgtattgtCCTCCCTACCTGTTatatttgatctaatccgtgtcctgaaatacaccccctctcctgcttttacttctaattctaacagagggagcgatttgtttgtgaatgaatctccaatATGAACGTTTCGTTTGAACCATCGATATTCCTGCATCTCAATGTGCATAATATATCCACATTTCTGTTCTAAAtgatatataacatttaaaatatttaataatttagggTGTTATCAGgcataagttacttcaaaaactagcCGTGACTTAGCCAACAATaatgcaagtttctggcagcgcagagtcttgttttcatatttcattaacattgtttgctgatttaatTCATCAAAACTAGCATAAGTCTAGATTTGAGTGCAAATTAGTGTTACTTTGCATCATGGTCAGCGTGGTAAGTCTAtaagactgtattatcatcaataacattattttttttaagtttgtaacatacaaaaactaAAGGTGGGCATAGATAATTTCTTTTAATCTAGAATAATcttgaaattaatctagattaatctagattaaaatggctcatttgaaatCTGCCGAATGCATTCAGAATAAGTGTGcaacccaaataataagtctttgataACGGGTATCTCAActcaggtggcgcattagaccaggagctcatctcctgtttccaaaatgcatcacaaactgcttgagaaactgttctactatgataattggtgatgaaaataaatgatgttcaataagatatACTTGTGCTTACTGTttatgaattttgaactgtatgcctacataagctccaaatagagatttttgatcaccttaatccaactaaagtcataactgaactaaacagaaatggaattaagacgtggagcatgcatatattagtggcattattgaagtaaacaccgcaatcagtAAAGGACTTTACatcatattttccgacaagatccacatgCGTCTGTCAGTAAAAGacggcacacacacaaacacatcgcaaaatgcagaagtttttttctttccatttgtcacacgttattaaattccataacactctcaccagtcctcactccttatttgtgtctaataccccagtttgtcacggtaGCATgtatgaaatgttcatgagttaaagtgaaactgctgaactgcagttaaagtcaggcatcctgctgatttgattcagaagggcacttttttgtcagacggctcaccggtcaggtgtacatccgcgctaaaatatcaaattaaagtcatcatagcttgcgtagaatagacccagctcccaacttaactttgagaatagattaacgccgatatttttttaaatcacgcgATAGGAGTCTCGCATTAACATAGAAAGTTAACGCCGATAACAGTCCACCACTaccaaaaacgtaaaaaaaagaaatcttacctatgaaatgtgatgcctttatgctttgtttgctcattactacacccatATGCAGCGCAAAAGTGGGGTGATGCGGACGCTGCTCTcactattctgccaccctaggtcacctctatggatGCGCGGGTCCTGGTCTTGACAATTGCgattgaatgacttttgtcctggaagccctgtacaaatgtggcggcagtATTGACGAATGCTCAAGGCCGATATATAATATCTAGGGAACATATCTATGATgcaaagcaaatgagaagcatcttgaagggggtggggcatgtaaGATACTagggagcatttgattggtcagatgaatTGATGTGAAACTGCAAGCTTTCACACAGCTATGTGaattttgtcaatgtttttaGGGACATTCGCTTAAAGATATCCTTATGACAATCGAActtatattaacattaaaaacaaaaaaaacataataaaaagtattttaatttcacaggacctttaaatcGTTCCCGCAAAAATCCGTCTCGACTAGAGATGCCTAAAGTAGGCACGGGCcgaagttggcccattgtaacctttaatTTTGCCCACCATCCCAATTTGAGGAGAATGATGAAGGGTTGGGGCAAACGCCTTTAAAAGAGATCGTCATTTTATATGACATTCTATACTTATTAAGAAAAGGTTTgtgcacccctggtctagactatACAGGTTTTATAGACAACACAAGTATGGAAATGTCTTAAGCCACCAACAATATTGATAAAAAGGTGATAATTACATTCAATTTTAAACATATAGACCCTTTAAATAACCTGTTCCTCAAAAAAACACTTACTTGTTTTTTATGGCAAGATGCAGAGGTGTAAAACCAGAGCAGTTTACCATATGGCATGACGCTCCAATAGACAATAAATGCTTTACTATGTAAGTTATGCCCTTTTCACAAGCTCTGTGCATGACAGTGTTGCCATCATAATCTTCAGCATCCACGTCCATCTGAAGAAATCATTTGAGAATTAACAATTGCATAACCTGCGATATGAACGAGCAGAACAGCCCAATGCTCTTCATTTTCTACATGTTGCAAGCGTTATTAATCTTACCATGTCTAGGATCTCCTGTAAACACACCAGGTCGTTGTTTTCTACACATTGGCAGGCAAAAGAGGGCAGCAGCAGTGACAGAATTGTTGTGACATCCTGAGTAAAAGCATCTTATGTTACATTACTTCAAGTCAATCTAACATTTTTCAAGTTTACTGTAATAATTTATGAGAAGGGAACGTCCATAAGAAATTAGATTCATTTCAAATAGACATTggatgataactgtt

Function

symbol description
aldob Predicted to enable fructose-1-phosphate aldolase activity and fructose-bisphosphate aldolase activity. Predicted to be involved in fructose 1,6-bisphosphate metabolic process and glycolytic process. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be active in cytosol. Is expressed in several structures, including EVL; alar plate midbrain region; digestive system; intestinal bulb primordium; and midbrain. Human ortholog(s) of this gene implicated in hereditary fructose intolerance syndrome and type 2 diabetes mellitus. Orthologous to human ALDOB (aldolase, fructose-bisphosphate B).

GO:

id name namespace
GO:0030388 fructose 1,6-bisphosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016829 lyase activity molecular_function
GO:0004332 fructose-bisphosphate aldolase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0061609 fructose-1-phosphate aldolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-383 Predicted to enable fructose-1-phosphate aldolase activity and fructose-bisphosphate aldolase activity. Predicted to be involved in fructose 1,6-bisphosphate metabolic process and glycolytic process. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be active in cytosol. Is expressed in several structures, including EVL; alar plate midbrain region; digestive system; intestinal bulb primordium; and midbrain. Human ortholog(s) of this gene implicated in hereditary fructose intolerance syndrome and type 2 diabetes mellitus. Orthologous to human ALDOB (aldolase, fructose-bisphosphate B).

Ensembl:

ensembl_id ENSDARG00000053684

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014299 False 1532 mRNA 0.49 9 21106444 21115194
TCONS_00014300 False 701 lncRNA 0.48 5 21106565 21111641
TCONS_00014301 False 810 mRNA 0.45 5 21106573 21115194
TCONS_00014302 False 783 mRNA 0.49 6 21107032 21111752
TCONS_00014303 False 979 mRNA 0.49 7 21107149 21112157
TCONS_00014304 True 4714 mRNA 0.39 9 21107271 21121199

Neighbor

gene id symbol gene type direction distance location
XLOC_007249 pimr192 coding upstream 61904 21042178 ~ 21044540 (+)
XLOC_007248 pimr193 coding upstream 64596 21038462 ~ 21041848 (+)
XLOC_007247 pimr194 coding upstream 96117 21007957 ~ 21010327 (+)
XLOC_007246 pimr195 coding upstream 98791 21005372 ~ 21007653 (+)
XLOC_007245 zgc:66433 coding upstream 104688 20918701 ~ 21001756 (+)
XLOC_007251 CTBP1 coding downstream 19413 21140612 ~ 21199502 (+)
XLOC_007252 si:ch211-175m2.4 coding downstream 101088 21222287 ~ 21230168 (+)
XLOC_007253 smim19 coding downstream 117483 21238682 ~ 21245773 (+)
XLOC_007254 NA coding downstream 171915 21293114 ~ 21293498 (+)
XLOC_007255 ndufs8b coding downstream 549908 21671107 ~ 21678917 (+)
XLOC_007241 NA non-coding upstream 261404 20841544 ~ 20845040 (+)
XLOC_007240 NA non-coding upstream 344885 20759629 ~ 20761559 (+)
XLOC_007238 NA non-coding upstream 837050 20268011 ~ 20269394 (+)
XLOC_007236 CR318673.1 non-coding upstream 1294959 19806641 ~ 19811485 (+)
XLOC_007235 NA non-coding upstream 1390106 19712262 ~ 19716338 (+)
XLOC_007259 NA non-coding downstream 656358 21777557 ~ 21777836 (+)
XLOC_007268 NA non-coding downstream 1007897 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 1686299 22807498 ~ 22811997 (+)

Expression


Co-expression Network