XLOC_007251 (CTBP1)


Basic Information

Item Value
gene id XLOC_007251
gene name CTBP1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21140612 ~ 21199502 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014305
GACATGGGCCAGACTGACATTAATCGACTTATTTACCCCTTTAACACAGCTGTCGACGCAATTCATAACTGAACATGCGATGTCACTGCTGGAATATTTGCGATCACTCCGGTTAGATCGGAAACAAAAGATCAATTTTGCGAGAGCACTGGCTCCACCCCATTCCTCTTCAGTGTTTCTTGTAGCCACCTCGCactcgctttctctctctctctctctctctctctctctctctctctcgctctcccaCTCCCATAAATGCAGTGACACTTGCTttctgtgtgtgcatgcgtgtttgtCCGAGTGAGAGAGTCGAAATAGAAAGTGAGGGAGCTGGGGGGGAGAGAGAGGGAGTTggagagaaagagaaacacaAGGAGGGGTGGCAGCGTGCGTGTTGAAGCTAGCTACTCACAGAAAAGAAGGAATAAGAAAATTGAAGTAGCCGCCATATGCTGAGGATTTTGGTGAATGCCTTGCTGAGGAGACACTCTCGTATTTCTGGCGGATCCTAAGAGATGGGAAGCTCACACTTGCTGAACAAAGGCTTGCCTTTAGGCATCAGGCCTCCCATAATGAATGGCCCCATGCACCCTCGTCCTCTGGTGGCCCTGCTAGATGGACGGGACTGTACGGTGGAGATGCCCATCTTGAAGGACGTGGCCACTGTGGCGTTCTGCGATGCCCAGTCCACTCAGGAGATCCATGAGAAGGTATTAAATGAAGCAGTGGGTGCTCTCATGTACCACACAATCACCCTTATGAGGGAGGACCTGGAAAAGTTCAAAGCACTTCGTATAATTGTCCGCATTGGGAGCGGCTTTGATAATATCGACATAAAGTCTGCTGGAGACTTAGGTATTGCCGTCTGCAACATGCCAGCAGCATCAGTAGAAGAGACTGCAGACTCCACCATGTGTCACATCCTAAATCTCTACCGACGCACCACCTGGTTGCACCAGGCTCTCCGGGAAGGCACGCGAGTCCAGAGTGTGGAACAGATTCGGGAGGTCGCATCTGGAGCAGCCCGAATCAGAGGAGAGACACTGGGAATCATTGGACTGGGGCGTGTTGGACAGGCGGTGGCGCTGAGGGCAAAAGCGTTCGGCTTCAGTGTGATCTTCTATGACCCGTACCTGTCTGACGGGATGGAGCGAGCCCTGGGGCTGCAGAGAGTCAACACCCTACAGGACCTGCTCTTCCACAGCGACTGCGTCACTTTACACTGCAGTCTGAATGAGCACAACCACCATCTGATCAATGACTTCACCATCAAACAGATGCGTCAAGGCGCCTTCCTAGTGAACACTGCGCGTGGTGGTCTTGTGGATGAGAAAGCTCTGGCTCAGGCTCTGAAAGAGGGCAGAATACGAGGAGCAGCACTGGACGTCCACGAGACAGAGCCCTTCAGTTTTAGTCAAGGACCCCTTAAAGACGCCCCCAACCTTATCTGCACCCCTCATGCGGCGTGGTACAGTGAACAGGCCTCGATTGAGATGCGGGAGGAGGCGGCACGGGAGATCCGACGAGCTATTACTGGTCGCATTCCAGACAGTCTGAAGAACTGCGTGAACAAAGAGTTCCTCACACAGACCACGCATTGGGCCGGCATGGACCCTGCAGTTGTTCATCCAGAGCTCAATGGAGCCTACAGGTACCCTCCAGGCGTAGTGAGCCACGCTTCAGGGGGTCTACCTCCACCAGTGGAGGGCATCATGCCAAGTGCAGTGCCAATAACTCACAGCCTGCCTACTGTAGCCCACCCCCCACACGCCCCTTCACCCGGACAAACCGGAAAACCTGAACCTGATAGAGAGCAGCACCCCAACGAACAGTTGTAGCCCCCCTCATCTTCAAACGTACCACTATAAAACTCTCCTGGTCCTTCTTAACCCCAAAGAAGAGGAGCGGAAACAGGCTCCCGGGCTCAGAACCAGCCACAAAAAACAACCACGACTAGCCAAACTCTGACTGAACGGGTGGACTGCGCTCTTTGAAGTATCTAATGGGGaataaagcaacaacaaaaacaaaagagagagaaaatcaTGTGGATTTTAAACTCCCTGATGCAAAATCCTGCTGTTTTAGATTGTAGTCTGTCCAAGTGCAGTGGGCGATCTTTTATCTGTTATTTTGTCTGTCTAATGGGTTTCATTGTTAAAACAACTGTAGCTATTACATGAATGTAACCTGTTTGTGTACAGTTTTTAGGATATGATCAATGGTTTGTAGATGAGAAATAAAAAAACCCGAAACAGCATTAAGGGAGGCATCTTACCACCTGATTATAGATATGATGAAAAGCATATTAGTTCAGCTCGTTTGTTTTTCAAAAGCCCCGAAAGAGGCGGGATTTGCACACCCTCTCAGGAAAATTTATTTCCCCCCTTCCTACATTTCTTCCTTTTAAATTAAACCACatagtgcattgttttttttacccatttgtcTTTTATAGTCAGTACAGTACCTTAAAGAACTACAGTCAGTATGGTTTTATTTTCGGAGCATGTATTACCTtatgtgttaaaaaaagaaaacagaaaaaaaaacatttttttttttacacgaaAATTTCACCGAAAAAAAAATTTGAcggcaacaaacaaaacaaaacaaaaaaacacaacaaaaacaaatttgtCTTGTGCAAAGCTGTTATGCTTGCCTGTTTGTGTGTGACTTGATTGTACCGTGTGTTTTCGAGGATGCCGGGATAGTTGCAGCTCTCCATCGCCTACATAGTTTCCTTCCTGGTAAAGTGGTAGGCTAGCAATATACATACTATATATACTATgagatattaatattttttgttaaacagaatccaaaaagaaATGTTTGTGACTGTATGCATTtgtatgaattattttaaatgaaataaaagtctgagttaaatgacaa
>TCONS_00014307
CACGGCCCTGATTGGACACAATTTCATTGCATGTTCTACCCGATTCCCGGGGCACATCAGGGACTTTAGCCTTCAAAGCGGGTGATGCAAGGCATCAGGCCTCCCATAATGAATGGCCCCATGCACCCTCGTCCTCTGGTGGCCCTGCTAGATGGACGGGACTGTACGGTGGAGATGCCCATCTTGAAGGACGTGGCCACTGTGGCGTTCTGCGATGCCCAGTCCACTCAGGAGATCCATGAGAAGGTATTAAATGAAGCAGTGGGTGCTCTCATGTACCACACAATCACCCTTATGAGGGAGGACCTGGAAAAGTTCAAAGCACTTCGTATAATTGTCCGCATTGGGAGCGGCTTTGATAATATCGACATAAAGTCTGCTGGAGACTTAGGTATTGCCGTCTGCAACATGCCAGCAGCATCAGTAGAAGAGACTGCAGACTCCACCATGTGTCACATCCTAAATCTCTACCGACGCACCACCTGGTTGCACCAGGCTCTCCGGGAAGGCACGCGAGTCCAGAGTGTGGAACAGATTCGGGAGGTCGCATCTGGAGCAGCCCGAATCAGAGGAGAGACACTGGGAATCATTGGACTGGGGCGTGTTGGACAGGCGGTGGCGCTGAGGGCAAAAGCGTTCGGCTTCAGTGTGATCTTCTATGACCCGTACCTGTCTGACGGGATGGAGCGAGCCCTGGGGCTGCAGAGAGTCAACACCCTACAGGACCTGCTCTTCCACAGCGACTGCGTCACTTTACACTGCAGTCTGAATGAGCACAACCACCATCTGATCAATGACTTCACCATCAAACAGATGCGTCAAGGCGCCTTCCTAGTGAACACTGCGCGTGGTGGTCTTGTGGATGAGAAAGCTCTGGCTCAGGCTCTGAAAGAGGGCAGAATACGAGGAGCAGCACTGGACGTCCACGAGACAGAGCCCTTCAGTTTTAGTCAAGGACCCCTTAAAGACGCCCCCAACCTTATCTGCACCCCTCATGCGGCGTGGTACAGTGAACAGGCCTCGATTGAGATGCGGGAGGAGGCGGCACGGGAGATCCGACGAGCTATTACTGGTCGCATTCCAGACAGTCTGAAGAACTGCGTGAACAAAGAGTTCCTCACACAGACCACGCATTGGGCCGGCATGGACCCTGCAGTTGTTCATCCAGAGCTCAATGGAGCCTACAGGTACCCTCCAGGCGTAGTGAGCCACGCTTCAGGGGGTCTACCTCCACCAGTGGAGGGCATCATGCCAAGTGCAGTGCCAATAACTCACAGCCTGCCTACTGTAGCCCACCCCCCACACGCCCCTTCACCCGGACAAACCGGAAAACCTGAACCTGATAGAGAGCAGCACCCCAACGAACAGTTGTAG
>TCONS_00014306
CACGGCCCTGATTGGACACAATTTCATTGCATGTTCTACCCGATTCCCGGGGCACATCAGGGACTTTAGCCTTCAAAGCGGGTGATGCAAGGTTTGTGATTGTTTTGCTTTTCTCTTTGAGCTAGATGTGTGCTTGTCACAAAAGAAAAGAGGCCAAACCGCGCCGATAGAGCTCTGCTTTCATTAGCTCTTTTATTCCTGTCAGGGAGATGAAGGCGGCTGTGGACTGCTTTTGACGGGGCTGGCTTTCTTAGCTAACATACTTGCAATTTGAGGGCACTTAGTGTGGCACAATTCGGGTTACTTTGAGTAAGTGGGATCGCAACTTGACATTAATGAATCATTATTCCTTCAATGGCGGTAACAAGTGAGACACTGACTGAAGCTGGGATGAGAACCGTATGGACATGGAAACAAAAGATCAATTTTGCGAGAGCACTGGCTCCACCCCATTCCTCTTCAGTGTTTCTTGTAGCCACCTCGCactcgctttctctctctctctctctctctctctctctctctctctcgctctcccaCTCCCATAAATGCAGTGACACTTGCTttctgtgtgtgcatgcgtgtttgtCCGAGTGAGAGAGTCGAAATAGAAAGTGAGGGAGCTGGGGGGGAGAGAGAGGGAGTTggagagaaagagaaacacaAGGAGGGGTGGCAGCGTGCGTGTTGAAGCTAGCTACTCACAGAAAAGAAGGAATAAGAAAATTGAAGTAGCCGCCATATGCTGAGGATTTTGGTGAATGCCTTGCTGAGGAGACACTCTCGTATTTCTGGCGGATCCTAAGAGATGGGAAGCTCACACTTGCTGAACAAAGGCTTGCCTTTAGGCATCAGGCCTCCCATAATGAATGGCCCCATGCACCCTCGTCCTCTGGTGGCCCTGCTAGATGGACGGGACTGTACGGTGGAGATGCCCATCTTGAAGGACGTGGCCACTGTGGCGTTCTGCGATGCCCAGTCCACTCAGGAGATCCATGAGAAGGTATTAAATGAAGCAGTGGGTGCTCTCATGTACCACACAATCACCCTTATGAGGGAGGACCTGGAAAAGTTCAAAGCACTTCGTATAATTGTCCGCATTGGGAGCGGCTTTGATAATATCGACATAAAGTCTGCTGGAGACTTAGGTATTGCCGTCTGCAACATGCCAGCAGCATCAGTAGAAGAGACTGCAGACTCCACCATGTGTCACATCCTAAATCTCTACCGACGCACCACCTGGTTGCACCAGGCTCTCCGGGAAGGCACGCGAGTCCAGAGTGTGGAACAGATTCGGGAGGTCGCATCTGGAGCAGCCCGAATCAGAGGAGAGACACTGGGAATCATTGGACTGGGGCGTGTTGGACAGGCGGTGGCGCTGAGGGCAAAAGCGTTCGGCTTCAGTGTGATCTTCTATGACCCGTACCTGTCTGACGGGATGGAGCGAGCCCTGGGGCTGCAGAGAGTCAACACCCTACAGGACCTGCTCTTCCACAGCGACTGCGTCACTTTACACTGCAGTCTGAATGAGCACAACCACCATCTGATCAATGACTTCACCATCAAACAGATGCGTCAAGGCGCCTTCCTAGTGAACACTGCGCGTGGTGGTCTTGTGGATGAGAAAGCTCTGGCTCAGGCTCTGAAAGAGGGCAGAATACGAGGAGCAGCACTGGACGTCCACGAGACAGAGCCCTTCAGTTTTAGTCAAGGACCCCTTAAAGACGCCCCCAACCTTATCTGCACCCCTCATGCGGCGTGGTACAGTGAACAGGCCTCGATTGAGATGCGGGAGGAGGCGGCACGGGAGATCCGACGAGCTATTACTGGTCGCATTCCAGACAGTCTGAAGAACTGCGTGAACAAAGAGTTCCTCACACAGACCACGCATTGGGCCGGCATGGACCCTGCAGTTGTTCATCCAGAGCTCAATGGAGCCTACAGGTACCCTCCAGGCGTAGTGAGCCACGCTTCAGGGGGTCTACCTCCACCAGTGGAGGGCATCATGCCAAGTGCAGTGCCAATAACTCACAGCCTGCCTACTGTAGCCCACCCCCCACACGCCCCTTCACCCGGACAAACCGGAAAACCTGAACCTGATAGAGAGCAGCACCCCAACGAACAGTTGTAG
>TCONS_00014308
ctctcccaCTCCCATAAATGCAGTGACACTTGCTttctgtgtgtgcatgcgtgtttgtCCGAGTGAGAGAGTCGAAATAGAAAGTGAGGGAGCTGGGGGGGAGAGAGAGGGAGTTggagagaaagagaaacacaAGGAGGGGTGGCAGCGTGCGTGTTGAAGCTAGCTACTCACAGAAAAGAAGGAATAAGAAAATTGAAGTAGCCGCCATATGCTGAGGATTTTGGTGAATGCCTTGCTGAGGAGACACTCTCGTATTTCTGGCGGATCCTAAGAGATGGGAAGCTCACACTTGCTGAACAAAGGCTTGCCTTTAGGCATCAGGCCTCCCATAATGAATGGCCCCATGCACCCTCGTCCTCTGGTGGCCCTGCTAGATGGACGGGACTGTACGGTGGAGATGCCCATCTTGAAGGACGTGGCCACTGTGGCGTTCTGCGATGCCCAGTCCACTCAGGAGATCCATGAGAAGGTATTAAATGAAGCAGTGGGTGCTCTCATGTACCACACAATCACCCTTATGAGGGAGGACCTGGAAAAGTTCAAAGCACTTCGTATAATTGTCCGCATTGGGAGCGGCTTTGATAATATCGACATAAAGTCTGCTGGAGACTTAGGTATTGCCGTCTGCAACATGCCAGCAGCATCAGTAGAAGAGACTGCAGACTCCACCATGTGTCACATCCTAAATCTCTACCGACGCACCACCTGGTTGCACCAGGCTCTCCGGGAAGGCACGCGAGTCCAGAGTGTGGAACAGATTCGGGAGGTCGCATCTGGAGCAGCCCGAATCAGAGGAGAGACACTGGGAATCATTGGACTGGGGCGTGTTGGACAGGCGGTGGCGCTGAGGGCAAAAGCGTTCGGCTTCAGTGTGATCTTCTATGACCCGTACCTGTCTGACGGGATGGAGCGAGCCCTGGGGCTGCAGAGAGTCAACACCCTACAGGACCTGCTCTTCCACAGCGACTGCGTCACTTTACACTGCAGTCTGAATGAGCACAACCACCATCTGATCAATGACTTCACCATCAAACAGATGCGTCAAGGCGCCTTCCTAGTGAACACTGCGCGTGGTGGTCTTGTGGATGAGAAAGCTCTGGCTCAGGCTCTGAAAGAGGGCAGAATACGAGGAGCAGCACTGGACGTCCACGAGACAGAGCCCTTCAGTTTTAGTCAAGGACCCCTTAAAGACGCCCCCAACCTTATCTGCACCCCTCATGCGGCGTGGTACAGTGAACAGGCCTCGATTGAGATGCGGGAGGAGGCGGCACGGGAGATCCGACGAGCTATTACTGGTCGCATTCCAGACAGTCTGAAGAACTGCGTGAACAAAGAGTTCCTCACACAGACCACGCATTGGGCCGGCATGGACCCTGCAGTTGTTCATCCAGAGCTCAATGGAGCCTACAGGTACCCTCCAGGCGTAGTGAGCCACGCTTCAGGGGGTCTACCTCCACCAGTGGAGGGCATCATGCCAAGTGCAGTGCCAATAACTCACAGCCTGCCTACTGTAGCCCACCCCCCACACGCCCCTTCACCCGGACAAACCGGAAAACCTGAACCTGATAGAGAGCAGCACCCCAACGAACAGTTGTAGCCCCCCTCATCTTCAAACGTACCACTATAAAACTCTCCTGGTCCTTCTTAACCCCAAAGAAGAGGAGCGGAAACAGGCTCCCGGGCTCAGAACCAGCCACAAAAAACAACCACGACTAGCCAAACTCTGACTGAACGGGTGGACTGCGCTCTTTGAAGTATCTAATGGGGaataaagcaacaacaaaaacaaaagagagagaaaatcaTGTGGATTTTAAACTCCCTGATGCAAAATCCTGCTGTTTTAGATTGTAGTCTGTCCAAGTGCAGTGGGCGATCTTTTATCTGTTATTTTGTCTGTCTAATGGGTTTCATTGTTAAAACAACTGTAGCTATTACATGAATGTAACCTGTTTGTGTACAGTTTTTAGGATATGATCAATGGTTTGTAGATGAGAAATAAAAAAACCCGAAACAGCATT

Function

symbol description
ctbp1 Predicted to enable NAD binding activity; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and transcription corepressor activity. Acts upstream of or within retinoic acid receptor signaling pathway. Predicted to be located in nucleus. Orthologous to human CTBP1 (C-terminal binding protein 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010130-1 Predicted to enable NAD binding activity; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and transcription corepressor activity. Acts upstream of or within retinoic acid receptor signaling pathway. Predicted to be located in nucleus. Orthologous to human CTBP1 (C-terminal binding protein 1).

Ensembl:

ensembl_id ENSDARG00000019213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014305 False 2907 mRNA 0.47 10 21140612 21199502
TCONS_00014307 False 1374 mRNA 0.55 9 21145750 21198436
TCONS_00014306 False 2131 mRNA 0.53 10 21145750 21198436
TCONS_00014308 True 2024 mRNA 0.51 9 21159693 21198860

Neighbor

gene id symbol gene type direction distance location
XLOC_007250 aldob coding upstream 19413 21106444 ~ 21121199 (+)
XLOC_007249 pimr192 coding upstream 96072 21042178 ~ 21044540 (+)
XLOC_007248 pimr193 coding upstream 98764 21038462 ~ 21041848 (+)
XLOC_007247 pimr194 coding upstream 130285 21007957 ~ 21010327 (+)
XLOC_007246 pimr195 coding upstream 132959 21005372 ~ 21007653 (+)
XLOC_007252 si:ch211-175m2.4 coding downstream 22785 21222287 ~ 21230168 (+)
XLOC_007253 smim19 coding downstream 39180 21238682 ~ 21245773 (+)
XLOC_007254 NA coding downstream 93612 21293114 ~ 21293498 (+)
XLOC_007255 ndufs8b coding downstream 471605 21671107 ~ 21678917 (+)
XLOC_007256 ran coding downstream 486035 21685537 ~ 21693914 (+)
XLOC_007241 NA non-coding upstream 295572 20841544 ~ 20845040 (+)
XLOC_007240 NA non-coding upstream 379053 20759629 ~ 20761559 (+)
XLOC_007238 NA non-coding upstream 871218 20268011 ~ 20269394 (+)
XLOC_007236 CR318673.1 non-coding upstream 1329127 19806641 ~ 19811485 (+)
XLOC_007235 NA non-coding upstream 1424274 19712262 ~ 19716338 (+)
XLOC_007259 NA non-coding downstream 578055 21777557 ~ 21777836 (+)
XLOC_007268 NA non-coding downstream 929594 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 1607996 22807498 ~ 22811997 (+)

Expression


Co-expression Network