XLOC_007254


Basic Information

Item Value
gene id XLOC_007254
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21293114 ~ 21293498 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015970
attcattttccttcggcttagtccctttattcatcaaaagTTGCTTCAGagcaatgaactgccaacttaatcagcatttgttttacacagtggatgcccttccagctgcaacctagtacagggaaacacctatacactcacgtacacacatacactacggccaatttagtttattcaattgatatagtgcatgtctttggactgtggtggaaaccggagcagaaatgccaactcacccagccgggacttgaaccagcgaatttcttgctgtgaggcaacagtcccCAAATACTTTCTAAATAACAAattataagcagcaaattaggagtttattgaggcaaaatcatagttaatttttattaatagtaaaaattatATTAGTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015970 True 385 lncRNA 0.38 1 21293114 21293498

Neighbor

gene id symbol gene type direction distance location
XLOC_007253 smim19 coding upstream 47341 21238682 ~ 21245773 (+)
XLOC_007252 si:ch211-175m2.4 coding upstream 62946 21222287 ~ 21230168 (+)
XLOC_007251 CTBP1 coding upstream 93612 21140612 ~ 21199502 (+)
XLOC_007250 aldob coding upstream 171915 21106444 ~ 21121199 (+)
XLOC_007249 pimr192 coding upstream 248574 21042178 ~ 21044540 (+)
XLOC_007255 ndufs8b coding downstream 377609 21671107 ~ 21678917 (+)
XLOC_007256 ran coding downstream 392039 21685537 ~ 21693914 (+)
XLOC_007257 stx3a coding downstream 405631 21699129 ~ 21751346 (+)
XLOC_007258 kdm2ab coding downstream 461023 21754521 ~ 21782227 (+)
XLOC_007259 NA coding downstream 484059 21777557 ~ 21777836 (+)
XLOC_007241 NA non-coding upstream 448074 20841544 ~ 20845040 (+)
XLOC_007240 NA non-coding upstream 531555 20759629 ~ 20761559 (+)
XLOC_007238 NA non-coding upstream 1023720 20268011 ~ 20269394 (+)
XLOC_007236 CR318673.1 non-coding upstream 1481629 19806641 ~ 19811485 (+)
XLOC_007235 NA non-coding upstream 1576776 19712262 ~ 19716338 (+)
XLOC_007268 NA non-coding downstream 835598 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 1514000 22807498 ~ 22811997 (+)
XLOC_007279 NA non-coding downstream 1547659 22841157 ~ 22959220 (+)

Expression


Co-expression Network