XLOC_007256 (ran)


Basic Information

Item Value
gene id XLOC_007256
gene name ran
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21685537 ~ 21693914 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014317
CCGCGGCAGCAGCAGGTCACGTGGTGGGGCGGAAGCGTTTATGTGAGCCATGCTGAATCCCgcgcgggcgcagccatttgctCTCTTCCTCGATCACTTCAACACCGAGTGACTGCAGCACAAAGaccaacacacactcacagtacAGCGATGGCGGAGAACGAGCCACAAGTTCAGTTTAAGCTGGTTCTGGTAGGTGATGGAGGTACGGGGAAAACCACCTTCGTGAAGAGACACTTGACTGGGGAGTTTGAAAAGAAATATGTTGcTACACTTGGAGTTGAGGTACATCCCCTGGTCTTCCACACTAACAGAGGAGCCATCAAATATAATGTATGGGACACAGCCGGACAGGAGAAGTTCGGTGGCCTGAGAGATGGCTATTACATCCAGGCTCAATGTGCAATCATCATGTTTGATGTAACTTCTCGAGTGACCTACAAAAATGTGCCCAACTGGCATCGTGACTTGGTGCGCGTGTGCGAGAACATTCCCATAGTGCTTTGTGGTAACAAAGTGGACATCAAGGACAGGAAGGTCAAAGCAAAGAGCATCGTGTTTCACCGTAAGAAGAATCTACAGTACTATGACATCTCTGCCAAGAGTAATTATAACTTTGAGAAGCCCTTCCTGTGGCTCGCACGGAAGCTGATTGGAGATCCCAATCTGGAGTTTGTGGAAATGCCTGCTCTTGCACCACCTGAAATTGCTATGGACCCAACACTTGCTGCACAGTATGAGCACGACTTGAAAgtGGCATCAGAAACAGCTCTCCCAGATGAAGATGACGATCTTTAACCTGTTAGCCTCTGACCTCATGGCGATGTCACTGTTTCCTGGTGACGGGTCCTTCCCCTGCCCCTTTTACTGTACAACCTTCCCTCCCCCAGCgcagaatatttttatttttcaattttcggttttttgttttgtgttttgaatttgagTAAATTGTGTGGTTGATTTCATTGTAGACATGCTAACTGTTTCCACCAGATACACACATGCAGACATGCCTACACATTGACACATTCGCTCACTCAAAGGTGTGAGAGCAGGCTAAGTGTCCCAGTGCTTACTTCGATATGTAAGGCTCTAAGCACTTAGAGGAATTCTTGGAATAAAAACATTCTCAATATAACCTTGCCTGGTTTCTCCTCAATTTATTTGACCTGAATTTGATAATGTCTCTGAAAATAAAACTATTGGTTGAGTATCTTGTGTAATCGTTGTATTCATCAGCTACTCTGTGTTTTTAATCTGTGCTGTTGTTTCAACCGTATTTAGTGCTGGATaaagattaatcgcatccaaaataa
>TCONS_00014318
ACTTCAACACCGGTGAGTGCGGAACGACTGCGTTCATCTCATCACACACTCTTTTCACTAACACGTTTTATTTTCAGCGCCGACTAAACACACCTGAAAGCTTTTCTGCAGTTCCCAGGCGCTAAGTGACTGCAGCACAAAGaccaacacacactcacagtacAGCGATGGCGGAGAACGAGCCACAAGTTCAGTTTAAGCTGGTTCTGGTAGGTGATGGAGGTACGGGGAAAACCACCTTCGTGAAGAGACACTTGACTGGGGAGTTTGAAAAGAAATATGTTGcTACACTTGGAGTTGAGGTACATCCCCTGGTCTTCCACACTAACAGAGGAGCCATCAAATATAATGTATGGGACACAGCCGGACAGGAGAAGTTCGGTGGCCTGAGAGATGGCTATTACATCCAGGCTCAATGTGCAATCATCATGTTTGATGTAACTTCTCGAGTGACCTACAAAAATGTGCCCAACTGGCATCGTGACTTGGTGCGCGTGTGCGAGAACATTCCCATAGTGCTTTGTGGTAACAAAGTGGACATCAAGGACAGGAAGGTCAAAGCAAAGAGCATCGTGTTTCACCGTAAGAAGAATCTACAGTACTATGACATCTCTGCCAAGAGTAATTATAACTTTGAGAAGCCCTTCCTGTGGCTCGCACGGAAGCTGATTGGAGATCCCAATCTGGAGTTTGTGGAAATGCCTGCTCTTGCACCACCTGAAATTGCTATGGACCCAACACTTGCTGCACAGTATGAGCACGACTTGAAAgtGGCATCAGAAACAGCTCTCCCAGATGAAGATGACGATCTTTAACCTGTTAGCCTCTGACCTCATGGCGATGTCACTGTTTCCTGGTGACGGGTCCTTCCCCTGCCCCTTTTACTGTACAACCTTCCCTCCCCCAGCgcagaatatttttatttttca
>TCONS_00014319
TGATGTGACTAACCGTCCCGCCATCTCTCCCGCAGAGTGACTGCAGCACAAAGaccaacacacactcacagtacAGCGATGGCGGAGAACGAGCCACAAGTTCAGTTTAAGCTGGTTCTGGTAGGTGATGGAGGTACGGGGAAAACCACCTTCGTGAAGAGACACTTGACTGGGGAGTTTGAAAAGAAATATGTTGcTACACTTGGAGTTGAGGTACATCCCCTGGTCTTCCACACTAACAGAGGAGCCATCAAATATAATGTATGGGACACAGCCGGACAGGAGAAGTTCGGTGGCCTGAGAGATGGCTATTACATCCAGGCTCAATGTGCAATCATCATGTTTGATGTAACTTCTCGAGTGACCTACAAAAATGTGCCCAACTGGCATCGTGACTTGGTGCGCGTGTGCGAGAACATTCCCATAGTGCTTTGTGGTAACAAAGTGGACATCAAGGACAGGAAGGTCAAAGCAAAGAGCATCGTGTTTCACCGTAAGAAGAATCTACAGTACTATGACATCTCTGCCAAGAGTAATTATAACTTTGAGAAGCCCTTCCTGTGGCTCGCACGGAAGCTGATTGGAGATCCCAATCTGGAGTTTGTGGAAATGCCTGCTCTTGCACCACCTGAAATTGCTATGGACCCAACACTTGCTGCACAGTATGAGCACGACTTGAAAgtGGCATCAGAAACAGCTCTCCCAGATGAAGATGACGATCTTTAACCTGTTAGCCTCTGACCTCATGGCGATGTCACTGTTTCCTGGTGACGGGTCCTTCCCCTGCCCCTTTTACTGTACAACCTTCCCTCCCCCAGCgcagaatatttttatttttcaattttcggttttttgttttgtgttttgaatttgagTAAATTGTGTGGTTGATTTCATTGTAGACATGCTAACTGTTTCCACCAGATACACACATGCAGACATGCCTACACATTGACACATTCGCTCACTCAAAGGTGTGAGAGCAGGCTAAGTGTCCCAGTGCTTACTTCGATATGTAAGGCTCTAAGCACTTAGAGGAATTCTTGGAATAAAAACATTCTCAATATAACCTTGCCTGGTTTCTCCTCAATTTATTTGACCTGAATTTGATAATGTCTCTGAAAATAAAACTATTGGTTGAGTATCTTGTGTAATCGTTGTATTCATCAGCTACTCTGTGTTTTTAATCTGTGCTGTTGTTTCAACCGTATTTAGTGCTGGATaaagattaatcgcatccaaaataa
>TCONS_00014320
CCGCCATCTCTCCCGCAGAGTGACTGCAGCACAAAGaccaacacacactcacagtacAGCGATGGCGGAGAACGAGCCACAAGTTCAGTTTAAGCTGGTTCTGGTAGGTGATGGAGGTACGGGGAAAACCACCTTCGTGAAGAGACACTTGACTGGGGAGTTTGAAAAGAAATATGTTGcTACACTTGGAGTTGAGGTACATCCCCTGGTCTTCCACACTAACAGAGGAGCCATCAAATATAATGTATGGGACACAGCCGGACAGGAGAAGTTCGGTGGCCTGAGAGATGGCTATTACATCCAGGGTATGAAACTCTTCAGTTTATATGCTTTGCTCATGGGGCGACTGTGGATTAACATGTGTTTCTGTTTTTCTAGCTCAATGTGCAATCATCATGTTTGATGTAACTTCTCGAGTGACCTACAAAAATGTGCCCAACTGGCATCGTGACTTGGTGCGCGTGTGCGAGAACATTCCCATAGTGCTTTGTGGTAACAAAGTGGACATCAAGGACAGGAAGGTCAAAGCAAAGAGCATCGTGTTTCACCGTAAGAAGAATCTACAGTACTATGACATCTCTGCCAAGAGTAATTATAACTTTGAGAAGCCCTTCCTGTGGCTCGCACGGAAGCTGATTGGAGATCCCAATCTGGAGTTTGTGGAAATGCCTGCTCTTGCACCACCTGAAATTGCTATGGACCCAACACTTGCTGCACAGTATGAGCACGACTTGAAAgtGGCATCAGAAACAGCTCTCCCAGATGAAGATGACGATCTTT

Function

symbol description
ran Predicted to enable GTP binding activity; GTPase activity; and magnesium ion binding activity. Acts upstream of or within neural retina development. Predicted to be located in cytosol and nuclear envelope. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; eye; pronephros; and splanchnocranium. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human RAN (RAN, member RAS oncogene family).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0000054 ribosomal subunit export from nucleus biological_process
GO:0046039 GTP metabolic process biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0003407 neural retina development biological_process
GO:0007275 multicellular organism development biological_process
GO:0015031 protein transport biological_process
GO:0061015 snRNA import into nucleus biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko05166 Human T-cell leukemia virus 1 infection
ko03019 Messenger RNA biogenesis
ko03009 Ribosome biogenesis
ko03016 Transfer RNA biogenesis
ko03036 Chromosome and associated proteins
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-990415-88 Predicted to enable GTP binding activity; GTPase activity; and magnesium ion binding activity. Acts upstream of or within neural retina development. Predicted to be located in cytosol and nuclear envelope. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; eye; pronephros; and splanchnocranium. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human RAN (RAN, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000057026

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014317 False 1319 mRNA 0.45 7 21685537 21693914
TCONS_00014318 False 929 mRNA 0.48 7 21685632 21693507
TCONS_00014319 False 1247 mRNA 0.44 6 21686207 21693914
TCONS_00014320 True 780 lncRNA 0.47 5 21686224 21693391

Neighbor

gene id symbol gene type direction distance location
XLOC_007255 ndufs8b coding upstream 6620 21671107 ~ 21678917 (+)
XLOC_007254 NA coding upstream 392039 21293114 ~ 21293498 (+)
XLOC_007253 smim19 coding upstream 439764 21238682 ~ 21245773 (+)
XLOC_007252 si:ch211-175m2.4 coding upstream 455369 21222287 ~ 21230168 (+)
XLOC_007251 CTBP1 coding upstream 486035 21140612 ~ 21199502 (+)
XLOC_007257 stx3a coding downstream 5215 21699129 ~ 21751346 (+)
XLOC_007258 kdm2ab coding downstream 60607 21754521 ~ 21782227 (+)
XLOC_007259 NA coding downstream 83643 21777557 ~ 21777836 (+)
XLOC_007260 ankrd13d coding downstream 89315 21783229 ~ 21816706 (+)
XLOC_007261 ctbp1 coding downstream 126120 21820034 ~ 21846181 (+)
XLOC_007241 NA non-coding upstream 840497 20841544 ~ 20845040 (+)
XLOC_007240 NA non-coding upstream 923978 20759629 ~ 20761559 (+)
XLOC_007238 NA non-coding upstream 1416143 20268011 ~ 20269394 (+)
XLOC_007268 NA non-coding downstream 435182 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 1113584 22807498 ~ 22811997 (+)
XLOC_007279 NA non-coding downstream 1147243 22841157 ~ 22959220 (+)
XLOC_007293 NA non-coding downstream 2536997 24230911 ~ 24234703 (+)

Expression


Co-expression Network