XLOC_007257 (stx3a)


Basic Information

Item Value
gene id XLOC_007257
gene name stx3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21699129 ~ 21751346 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014321
ggagagggaggaaTACAGATTAAGCAGACTGAACACAACTGTTGTTTTAATCCTCTGAGCGGATAGATTTAGATGAAAAAAAACTACTGGTTTGGAGGAGAGCAGCCATATTGCATGGACCTTTGGTGGAATAACAAGACTCTGTGTCGGAGCAGGAATCCGCGGAGTTCAGGAGCAAACATCTAGACTTCGCGAACCGCTCCGACGCTACTTTCACCGTCTTATTGTCACATtacctatttattatttatttattttattttctggatAGTGTTAAACAGCAGACAGAAATATGAAGGACCGACTGGAACAACTAAAAGCGaCGTGCGATCATGATGACGAGGATGTTGAGATCGCGGTGGACAATGCTGCTTTTATGGATGAGTTTTTTTCCCAGattgaaGACATTAGAAACAGCATTGATAAGATCGATGAGAATGTGGCCGAAGTGAAAAAACTTTACTCCGTTATTCTTTCTGCACCAACGTCAGACCAGAAAACACAGGATGATTTGGAGGCATTAACTAATGATATCAAGAAAATGGCCAACAATGCTCGGAACAAACTGAAGACCATTGAAAGGAATCTTGAGACGGAAGAAGTGGAAAGAGTATCGGCCGACATGAGAATACGTAAATCACAGCACGCTGTTCTTTCCAGAAAGTTTGTTGATGTCATGACCAAATACAATGAAGCTCAGGTGGACTTCAGAGAGAAGAGCAAAGGTCGCATTCAGAGACAACTAGAGATCACCGGTAAAGCCACAACTGATGAGGAGCTTGAGGAGATGCTGGAGGGTGGAAACGCAGCCGTTTTTACAGCAGGGATTGTGGATTCAGGGATCTCCAAACAAGCACTGAGCGAGATCGAAGCACGTCACAAAGACATTGTGCGTCTGGAGAGCAGCATAAAGGAGCTGCACGACATGTTTGTGGACATTGCCATGCTAGTGGAGAGCCAGGGCAACATGGTTGATAACATTGAGGTGAATGTGGGTAAAGCAGTCGATCACGTTGAAGCCGCAAGGGATGAAACCAAGAAAGCAGTCAGGTATCAGAGTAAAGCCCGGAAGaaaattattattatagtgtCTGTGGTTTTGGTGATTTTGGCCATTATTGCGTTGATAGTGGGTTTATCTGTAGGTCTGAAAAGATGATACCGAAGATGATCATAGTGGGTGTGGTTGTTGCTGTGGTGCtcgtcatcatcctcatcatcatcctcacACAGGTCTTATGATAACCTCTCCCTCAGCGGCTCACCATTATTACAGCTTATCACCTTCACTTTTCATCCTCCCTGTTTGTCCTTGGAGTTATGAATGGAAATGTCCGCCCCTTCACATATGGACTCTCTCTTCATCAGAACAGACCAATGGGAAACGAGTTTCTCTTCTCTCCTTTACATCCTCCATTTTACCTTAATGTTTTAAATGCCCCGCCCACTCCACATATGGCTCCTCCTCTCTTCAGCACAGACCAATGGGAAACGAGTTCCTCTCCTTTTCATCCTCCCTGTTTTACCTCAGGGTTTTAAATGCAAATGCCCCGCCCACTTCACATGTGGCTCCTCCCCTCATCAGCACAGACCAATGGGAAACAAGTCTGCTGGAACTCTAGTGATGGTCAAGAAAGTAGATTTTTAATATGTAATGACTGATGGGATCTGTTTAAGGAACCTCTACTACACGACAAGAATGCCTCTTGAAGGAAGATTATTTTAATGGACAAATCACAGAGCAAAGAATAAGGGATTTTATACGACTTGCATAGAAAGGCATCTTCCATTTCAAGCCTAAATGTTTGTTGATGTATAGTGTGTTCATCAATAGCTGTATTTAGTGAAATGTTCATGATCAAAAGGGCTCAGAGATGATTTTAGCTTCTGTTCTGGGACCTTGTGAAATGAACTTAAGCTAAACATTGATTGGTCATCCAGAGTGGAAGAAACACACATGTGTAGCGATTTTTTTAATAACGTAAAAGTTATGTATGGGagataaaaacagatttaaacaaatgaataaataacattttatattttctaaa
>TCONS_00014322
CAGAAATATGAAGGACCGACTGGAACAACTAAAAGCGaCGTGCGATCATGATGACGAGGATGTTGAGATCGCGGTGGACAATGCTGCTTTTATGGATGAGTTTTTTTCCCAGattgaaGACATTAGAAACAGCATTGATAAGATCGATGAGAATGTGGCCGAAGTGAAAAAACTTTACTCCGTTATTCTTTCTGCACCAACGTCAGACCAGAAAACACAGGATGATTTGGAGGCATTAACTAATGATATCAAGAAAATGGCCAACAATGCTCGGAACAAACTGAAGACCATTGAAAGGAATCTTGAGACGGAAGAAGTGGAAAGAGTATCGGCCGACATGAGAATACGTAAATCACAGCACGCTGTTCTTTCCAGAAAGTTTGTTGATGTCATGACCAAATACAATGAAGCTCAGGTGGACTTCAGAGAGAAGAGCAAAGGTCGCATTCAGAGACAACTAGAGATCACCGGTAAAGCCACAACTGATGAGGAGCTTGAGGAGATGCTGGAGGGTGGAAACGCAGCCGTTTTTACAGCAGGGATTGTGGATTCAGGGATCTCCAAACAAGCACTGAGCGAGATCGAAGCACGTCACAAAGACATTGTGCGTCTGGAGAGCAGCATAAAGGAGCTGCACGACATGTTTGTGGACATTGCCATGCTAGTGGAGAGCCAGGGTGGCATGATTGAAAGGATCGAGAACAACATGGACCAGTCAGTGGGTTTCGTGGAGCGAGCCGTTGCTGACACCAAGAAAGCAGCTAAATTTCAGCAGGAGGCTCGGCGTAAGAAAATGATGATCATGCTTTGCTGTGCGATTCTGGGGATTGTTGTGTTTTCTTACCTTTACAGCTTCTTTTCATAATGGCTGAAGTGACCACAAGGACTCCTGCCCGTCCTCTCACATCCGTGTTTTGAAGAGATGCGTTTACTGTGTAGTGTGCTTCAACCAAACGAACCCTCACACCCTATCGAGTGACTGAAaccagcgccctctgctgttcaaCAACTTCATTAAACAAGGACAATTCCTTTCAAAAGGAGCCCGGAGAGAGACAGACATGTCAATTTTTTTCGATGTTTGTTCTAGTTAATTTTGGTAGTTAGTAGATGTAATTTCGTCTCATAGTCTAATATGTTTGGTTGTATGTTTTAATGTTGAAACGAGTGTTTTTAACAGTAGTATATACACTTAGCCTATTTTGAATACGTCAATATGGTATGGTTGTCTTTAATGTGTTATGTTATCTAATAAAACGAGACCACAAGAAAAAA
>TCONS_00014323
TGTAAAGACCGCATGAGATCATTAAATaCGTGCGATCATGATGACGAGGATGTTGAGATCGCGGTGGACAATGCTGCTTTTATGGATGAGTTTTTTTCCCAGattgaaGACATTAGAAACAGCATTGATAAGATCGATGAGAATGTGGCCGAAGTGAAAAAACTTTACTCCGTTATTCTTTCTGCACCAACGTCAGACCAGAAAACACAGGATGATTTGGAGGCATTAACTAATGATATCAAGAAAATGGCCAACAATGCTCGGAACAAACTGAAGACCATTGAAAGGAATCTTGAGACGGAAGAAGTGGAAAGAGTATCGGCCGACATGAGAATACGTAAATCACAGCACGCTGTTCTTTCCAGAAAGTTTGTTGATGTCATGACCAAATACAATGAAGCTCAGGTGGACTTCAGAGAGAAGAGCAAAGGTCGCATTCAGAGACAACTAGAGATCACCGGTAAAGCCACAACTGATGAGGAGCTTGAGGAGATGCTGGAGGGTGGAAACGCAGCCGTTTTTACAGCAGGGATTGTGGATTCAGGGATCTCCAAACAAGCACTGAGCGAGATCGAAGCACGTCACAAAGACATTGTGCGTCTGGAGAGCAGCATAAAGGAGCTGCACGACATGTTTGTGGACATTGCCATGCTAGTGGAGAGCCAGGGCAACATGGTTGATAACATTGAGGTGAATGTGGGTAAAGCAGTCGATCACGTTGAAGCCGCAAGGGATGAAACCAAGAAAGCAGTCAGGTATCAGAGTAAAGCCCGGAAGaaaattattattatagtgtCTGTGGTTTTGGTGATTTTGGCCATTATTGCGTTGATAGTGGGTTTATCTGTAGGTCTGAAAAGATGA
>TCONS_00014324
agGGCAACATGGTTGATAACATTGAGGTGAATGTGGGTAAAGCAGTCGATCACGTTGAAGCCGCAAGGGATGAAACCAAGAAAGCAGTCAGGGTGGCATGATTGAAAGGATCGAGAACAACATGGACCAGTCAGTGGGTTTCGTGGAGCGAGCCGTTGCTGACACCAAGAAAGCAGCTAAATTTCAGCAGGAGGCTCGGCGTAAGATGATCATAGTGGGTGTGGTTG

Function

symbol description
stx3a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis; intracellular protein transport; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynapse; presynaptic active zone membrane; and synaptic vesicle. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0016081 synaptic vesicle docking biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0098967 exocytic insertion of neurotransmitter receptor to postsynaptic membrane biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0048787 presynaptic active zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098794 postsynapse cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1489 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis; intracellular protein transport; and vesicle docking. Predicted to act upstream of or within synaptic vesicle docking. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynapse; presynaptic active zone membrane; and synaptic vesicle. Predicted to be integral component of membrane. Is expressed in anterior axial hypoblast; hatching gland; notochord; polster; and retina. Orthologous to human STX3 (syntaxin 3).

Ensembl:

ensembl_id ENSDARG00000001880

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014321 False 2051 mRNA 0.42 11 21699129 21746346
TCONS_00014322 False 1275 mRNA 0.43 11 21699414 21751346
TCONS_00014323 False 864 mRNA 0.44 10 21722235 21743115
TCONS_00014324 True 227 processed_transcript 0.50 3 21739616 21745484

Neighbor

gene id symbol gene type direction distance location
XLOC_007256 ran coding upstream 5215 21685537 ~ 21693914 (+)
XLOC_007255 ndufs8b coding upstream 20212 21671107 ~ 21678917 (+)
XLOC_007254 NA coding upstream 405631 21293114 ~ 21293498 (+)
XLOC_007253 smim19 coding upstream 453356 21238682 ~ 21245773 (+)
XLOC_007252 si:ch211-175m2.4 coding upstream 468961 21222287 ~ 21230168 (+)
XLOC_007258 kdm2ab coding downstream 3175 21754521 ~ 21782227 (+)
XLOC_007259 NA coding downstream 26211 21777557 ~ 21777836 (+)
XLOC_007260 ankrd13d coding downstream 31883 21783229 ~ 21816706 (+)
XLOC_007261 ctbp1 coding downstream 68688 21820034 ~ 21846181 (+)
XLOC_007262 spon2a coding downstream 109753 21861099 ~ 21901815 (+)
XLOC_007241 NA non-coding upstream 854089 20841544 ~ 20845040 (+)
XLOC_007240 NA non-coding upstream 937570 20759629 ~ 20761559 (+)
XLOC_007238 NA non-coding upstream 1429735 20268011 ~ 20269394 (+)
XLOC_007268 NA non-coding downstream 377750 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 1056152 22807498 ~ 22811997 (+)
XLOC_007279 NA non-coding downstream 1089811 22841157 ~ 22959220 (+)
XLOC_007293 NA non-coding downstream 2479565 24230911 ~ 24234703 (+)

Expression


Co-expression Network