XLOC_007260 (ankrd13d)


Basic Information

Item Value
gene id XLOC_007260
gene name ankrd13d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 21783229 ~ 21816706 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014327
GACACGTCTTGTCAAATGAAATGAACGGTCCATAAATAAACGCTCGTGGATTTGTTTGTGTAGATGCAAATGTGGCCGCTGCCCAAACAAACATTTCATACAAACCGACCTAAATTTTAAACTTCATCACTTTACATACAATCCAAACGGCTTTTATCCAGAATAGCTGAAATGGCTGAAGAGGCGTTTCCTTTACATTATCTGGTCTGGAACAATCAATATCTGGAACTGGACCGAGAGCTTCAGAAAAAGCAGCATGACCTGGAGCGGCTGGATCCGCGCGGCCGCTCGGCGCTCGAGCTGTCAGTGTGTCTCGGGCACCTGGAGTCCACGCGCGTCCTGCTCAGACACAACGCAGATcccacacacaacaacacacaggGCTGGACAGTTTTGCAGGAGGCCGTGAGCACTGGAGACCCTGAACTGGTGCAGCTGGTCCTTCAGTACAGAGACTTCAGAAGAGCCACAGAGAGACTGGCTGGTATTcctgagctactgagcaaactgagaCAGGCACGTGACTTCTATGTGGAGATGAAATGGGAATTCACTAGCTGGGTTCCTCTAGTGTCGAAAGTTTGTCCAAGCGATGTTTACCGTGTCTGGAAAAGTGGTTCATGTTTGAGGGTCGACACCACTTTACTGGGCTTTGAGCACATGACTTGGCTAAAGGGCAGGCGTAGCTACATCTTTAAAGGTGGAGAGAGTGGAGCAATGGTGATGGAGGTTGACCACGAGAAGCAGGTGGTTTATACAGAGCCGCTGTCTCTTTCTCCACGTGACGCCCCATCTCTGCTCGCCGCCATGTTGCCCTCGCAAGAAAACACGGCACAGAGACTGACCTCTCCGATAGTGTCCACTCATCTGAACACACGCAACATCGCCTTCGAGAGAAATAAGTCTGGGATTTGGGGATGGCGCTCGGAGAAGACAGAGGTTGTCAGCGGATATGAAGCAAAGGTTTACAGTGCCAGTAATGTGGAGTTAGTGACTCGTTCTAGGACTGAACACCTTTCTGATCAGGACAAGTCTAGAAGTAAAGgATCTAGAACTCCTTTACAGTCGTTTCTGGGTATTGCTGAGCAGCACATCTCCAGTACTGGGaGTCAGGTTTCTCAGTGCGCGAGTCCTCATAATCCAACAGCGATCACAGCAGAGGAGTACTTTGATGCAGAGTTTAACCTGAATGGCAGAGATATTGGCCGGCCCATTGAACTGACCAGCAAAGTGCAGAAGTTTAAGGCCACTTTATGGTTAAGTGAAGCTCATCCTCTCTCTCTGGCGGAGCAGGTGACGCCCATCATTGACCTCATGGCCATTTCTAATGCCCACTTCGCCAAACTGAGAGACTTCATCACTCTCCGTCTGCCACCTGGCTTTCCTGTGAAGATAGaaATCCCTCTCTTCCACGTGTTGAACGCTCGAGTGACATTCAGCAATCTTTGTGGCTGCGATGAACCTGTCAGTTCTGTTACTGTGCAATCTCCACAAGGAGCAACAGAGGCTGGTGAGACTCCTCCACCACTGCAGTGTGAAGTGGACCCATCGGTGTTTGAGCCTCCTCCAGAATACACTACACTTGGACCGGGCCGCAGTGAGCCAATGAGAGACGAGGATGATAATTTACTCCAGTTTGCCATTCAACAGAGCCTGCTGGATGCCGGAACAGAGAGTGACCAgGTGACTATATGGGAGGCTCTCACTAACACTCGCCCAGTTTCTCAGCCTCCGCTTTACGAGGAAGACTCTCAGCTGGAGAGGGCGATTCAGGAGTCTCTGTCGTTGGCTGGAGGGGAGAGTGGAGAGTCAGACTCGGGCCCACCATTATCCCCATCTGATCCCGCTCTCAGTTCACCTCCATGTTACAGCTCTCTGACGGAGCCTCGGGCGCCCGGAGCGTTTGCTGTGGCCAGCAGTTTTGACGAACAGCTACGCCTCGCTATGGAGCTTTCATGCAGAGAACAAGAGGAGATAGACAGGAAGAGAAGGGAAGAAGAGGAAGAGCTGGAGAGAATTTTACAGCTGTCTCTAACAGAGAAGTAACTCCAGTACTGCTACATGTGGGATTTAAAGGAATTATTTATTGgttgtgttattattttattttctgcaacGTTAAATTATTCTTTTTCGCTCTTCATTtcttttacaaaaataataaagatgGGATAGAAAGAGAAACCAAGAGAGAGTGTGCACCAAGAACGGATTCAAAGAGCACGGCATGAAAACGTGAATGAGATGCTCTCGGTTCCGCTGTCTTCTGAGTGATGAAGGTCAGCTTCATTGTACAATGATACAgatgaaaatgtgaaaattatttaTGGATACTGATGACTATGGTAATGCATAAAGTACTGAAAATACTATTGCATAAAATGAGTTTACTTATGATGGATGATAACTACATCTAAGTATTAAATGTTGCTCAAACACTTTCACAACAA
>TCONS_00014328
ATGGCTGAAGAGGCGTTTCCTTTACATTATCTGGTCTGGAACAATCAATATCTGGAACTGGACCGAGAGCTTCAGAAAAAGCAGCATGACCTGGAGCGGCTGGATCCGCGCGGCCGCTCGGCGCTCGAGCTGTCAGTGTGTCTCGGGCACCTGGAGTCCACGCGCGTCCTGCTCAGACACAACGCAGATcccacacacaacaacacacaggGCTGGACAGTTTTGCAGGAGGCCGTGAGCACTGGAGACCCTGAACTGGTGCAGCTGGTCCTTCAGTACAGAGACTTCAGAAGAGCCACAGAGAGACTGGCTGGTATTcctgagctactgagcaaactgagaCAGGCACGTGACTTCTATGTGGAGATGAAATGGGAATTCACTAGCTGGGTTCCTCTAGTGTCGAAAGTTTGTCCAAGCGATGTTTACCGTGTCTGGAAAAGTGGTTCATGTTTGAGGGTCGACACCACTTTACTGGGCTTTGAGCACATGACTTGGCTAAAGGGCAGGCGTAGCTACATCTTTAAAGGTGGAGGTGATGGAGCAATGGTGATGGAGGTTGACCACGAGAAGCAGGTGGTTTATACAGAGCCGCTGTCTCTTTCTCCACGTGACGCCCCATCTCTGCTCGCCGCCATGTTGCCCTCGCAAGAAAACACGGCACAGAGACTGACCTCTCCGATAGTGTCCACTCATCTGAACACACGCAACATCGCCTTCGAGAGAAATAAGTCTGGGATTTGGGGATGGCGCTCGGAGAAGACAGAGGTTGTCAGCGGATATGAAGCAAAGGTTTACAGTGCCAGTAATGTGGAGTTAGTGACTCGTTCTAGGACTGAACACCTTTCTGATCAGGACAAGTCTAGAAGTAAAGgATCTAGAACTCCTTTACAGTCGTTTCTGGGTATTGCTGAGCAGCACATCTCCAGTACTGGGaGTCAGGTTTCTCAGTGCGCGAGTCCTCATAATCCAACAGCGATCACAGCAGAGGAGTACTTTGATGCAGAGTTTAACCTGAATGGCAGAGATATTGGCCGGCCCATTGAACTGACCAGCAAAGTGCAGAAGTTTAAGGCCACTTTATGGTTAAGTGAAGCTCATCCTCTCTCTCTGGCGGAGCAGGTGACGCCCATCATTGACCTCATGGCCATTTCTAATGCCCACTTCGCCAAACTGAGAGACTTCATCACTCTCCGTCTGCCACCTGGCTTTCCTGTGAAGATAGaaATCCCTCTCTTCCACGTGTTGAACGCTCGAGTGACATTCAGCAATCTTTGTGGCTGCGATGAACCTGTCAGTTCTGTTACTGTGCAATCTCCACAAGGAGCAACAGAGGCTGGTGAGACTCCTCCACCACTGCAGTGTGAAGTGGACCCATCGGTGTTTGAGCCTCCTCCAGAATACACTACACTTGGACCGGGCCGCAGTGAGCCAATGAGAGACGAGGATGATAATTTACTCCAGTTTGCCATTCAACAGAGCCTGCTGGATGCCGGAACAGAGAGTGACCAgGTGACTATATGGGAGGCTCTCACTAACACTCGCCCAGTTTCTCAGCCTCCGCTTTACGAGGAAGACTCTCAGCTGGAGAGGGCGATTCAGGAGTCTCTGTCGTTGGCTGGAGGGGAGAGTGGAGAGTCAGACTCGGGCCCACCATTATCCCCATCTGATCCCGCTCTCAGTTCACCTCCATGTTACAGCTCTCTGACGGAGCCTCGGGCGCCCGGAGCGTTTGCTGTGGCCAGCAGTTTTGACGAACAGCTACGCCTCGCTATGGAGCTTTCATGCAGAGAACAAGAGGAGATAGACAGGAAGAGAAGGGAAGAAGAGGAAGAGCTGGAGAGAATTTTACAGCTGTCTCTAACAGAGAAGTAA

Function

symbol description
ankrd13d Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13D (ankyrin repeat domain 13D).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-101007-3 Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13D (ankyrin repeat domain 13D).

Ensembl:

ensembl_id ENSDARG00000098140

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014327 False 2450 mRNA 0.48 16 21783229 21816706
TCONS_00014328 True 1875 mRNA 0.52 16 21783400 21816302

Neighbor

gene id symbol gene type direction distance location
XLOC_007258 kdm2ab coding upstream 1002 21754521 ~ 21782227 (+)
XLOC_007259 NA coding upstream 5393 21777557 ~ 21777836 (+)
XLOC_007257 stx3a coding upstream 31883 21699129 ~ 21751346 (+)
XLOC_007256 ran coding upstream 89315 21685537 ~ 21693914 (+)
XLOC_007255 ndufs8b coding upstream 104312 21671107 ~ 21678917 (+)
XLOC_007261 ctbp1 coding downstream 3328 21820034 ~ 21846181 (+)
XLOC_007262 spon2a coding downstream 44393 21861099 ~ 21901815 (+)
XLOC_007263 tbc1d10c coding downstream 88786 21905492 ~ 21923281 (+)
XLOC_007264 zgc:113229 coding downstream 117625 21934331 ~ 21944409 (+)
XLOC_007265 clcf1 coding downstream 205735 22022441 ~ 22038396 (+)
XLOC_007254 NA non-coding upstream 489731 21293114 ~ 21293498 (+)
XLOC_007241 NA non-coding upstream 938189 20841544 ~ 20845040 (+)
XLOC_007240 NA non-coding upstream 1021670 20759629 ~ 20761559 (+)
XLOC_007268 NA non-coding downstream 312390 22129096 ~ 22140213 (+)
XLOC_007278 BX005043.2 non-coding downstream 990792 22807498 ~ 22811997 (+)
XLOC_007279 NA non-coding downstream 1024451 22841157 ~ 22959220 (+)
XLOC_007293 NA non-coding downstream 2414205 24230911 ~ 24234703 (+)
XLOC_007298 BX005228.1 non-coding downstream 2540694 24357400 ~ 24357517 (+)

Expression


Co-expression Network