G78023 (scfd1)


Basic Information

Item Value
gene id G78023
gene name scfd1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3834562 ~ 3840570 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105210
GAAGAAGTGTTTGCTGACACTGGCGAGGACTCACTTCCACTGCTTTATGTAGTTCAAGGGTGAGAGGTCACAGCCAGCGTCAATCAAAGCCTTTTTGTACTGCTCCAGATCTccCTCAGATGGGGGTTGCTGGGAGGTGATGTAGTAGATCAGGAAGAGTCTCATCTTATCCTCTGGGGTACCAGCATCAGGGTCAGTGATGATGTCCAGAAGAGATTTGTCCAGAGTCGATTTGCTCATTAGCTTTTCCTCATATTCAAAGTACACATCCAGCTTGCGAGACTTGATGTGGTCGAGAACTGCTGTGGCAACGTTGGTGTGGAGGTCAATCAGTCTCTTCTTCTCTAGGAGCTCGGGAAGAGAACTAACAGCTGAGGTAAGTTTGGCAGTGTTATCCGACAACATGCTAATGGCTCCCTCATCCTCCCCTTCTAAACCCATGATGCTCTTTAGACGCTTGACCTCTTCTTCCTGGGCTCTGTACTTATCCAACTCTTCCTGCACCGATTCTGCAACCTCTGGGAACGggctgaaaaaagtaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
scfd1 Predicted to enable syntaxin binding activity. Acts upstream of or within several processes, including fin regeneration; glycoprotein transport; and skeletal system development. Predicted to be active in Golgi membrane and cytosol. Is expressed in digestive system; head; myotome; notochord; and pharyngeal arch. Orthologous to human SCFD1 (sec1 family domain containing 1).

NR:

description
PREDICTED: sec1 family domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105210 True 566 TUCP 0.46 6 3834562 3840570

Neighbor

gene id symbol gene type direction distance location
ankrd9 NA coding downstream 530995 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 929914 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 938881 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 958926 2869496 ~ 2875636 (-)
LOC111193124 LOC108270491,LOC108234815 coding downstream 1082306 2673416 ~ 2752256 (-)
strn3 strn3,LOC106611207,LOC107590905 coding upstream 40749 3881319 ~ 3909337 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding upstream 77086 3917656 ~ 3952193 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding upstream 115756 3956326 ~ 3991775 (-)
mis18bp1 NA coding upstream 153990 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 206493 4047063 ~ 4277821 (-)
G78022 g2e3 non-coding downstream 8947 3823445 ~ 3825615 (-)
G78019 NA non-coding downstream 19829 3813935 ~ 3814733 (-)
LOC111193170 NA non-coding downstream 195647 3633094 ~ 3638915 (-)
LOC111193169 NA non-coding downstream 214314 3572023 ~ 3620248 (-)
G77941 NA non-coding downstream 319282 3514696 ~ 3515280 (-)
LOC111193171 coch non-coding upstream 29991 3870561 ~ 3872428 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding upstream 36185 3876755 ~ 3879254 (-)
G78044 NA non-coding upstream 82745 3923315 ~ 3993581 (-)
G78054 NA non-coding upstream 172182 4012752 ~ 4013009 (-)
G78087 NA non-coding upstream 274202 4114772 ~ 4115105 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 120205 3645097 ~ 3714357 (-)
G77892 NA other downstream 485573 3297582 ~ 3348989 (-)
bmf bmf other downstream 627876 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 789799 2964024 ~ 3044763 (-)
G77656 NA other downstream 1643909 2190313 ~ 2190653 (-)
G78083 NA other upstream 204864 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1344222 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3358339 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4635827 8476397 ~ 8517648 (-)
spdya spdya other upstream 4792076 8632646 ~ 8641832 (-)

Expression


Co-expression Network