G78044


Basic Information

Item Value
gene id G78044
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3923315 ~ 3993581 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105243
CAGTCAAAAATcaatcagtgggtcacttgccattccctttaaaagccaagtggactctgactttggtggattgctattttaacagcgcagcacttctgcacatctcaagatagcaatacacccaaaatttacctgaacacaccacatttccagaccaccacgcccatcagtgtacacactattgctatttaaagggCGCAAAGCTTGAATAGACTGTTTGTGAAGTATTAGAAGTTACCATCGCAACATGCCCCTCACAGGATGCAAGATTGAGCCCTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105243 True 281 lncRNA 0.44 2 3923315 3993581

Neighbor

gene id symbol gene type direction distance location
strn3 strn3,LOC106611207,LOC107590905 coding downstream 13978 3881319 ~ 3909337 (-)
ankrd9 NA coding downstream 619748 3302159 ~ 3303567 (-)
LOC103025229 acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 1018667 2900144 ~ 2904648 (-)
LOC103024903 LOC108430667 coding downstream 1027634 2881109 ~ 2895681 (-)
LOC103025537 LOC108430628,LOC108269477,LOC107745352,LOC107711907 coding downstream 1047679 2869496 ~ 2875636 (-)
mis18bp1 NA coding upstream 979 3994560 ~ 4006610 (-)
mdga2 mdga2,mamdc1 coding upstream 53482 4047063 ~ 4277821 (-)
pole2 pole2 coding upstream 295922 4289503 ~ 4298158 (-)
lrr1 lrr1,LOC102779237 coding upstream 320710 4314291 ~ 4320359 (-)
nemf nemf coding upstream 337201 4330782 ~ 4353248 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding downstream 44061 3876755 ~ 3879254 (-)
LOC111193171 coch non-coding downstream 50887 3870561 ~ 3872428 (-)
G78022 g2e3 non-coding downstream 97700 3823445 ~ 3825615 (-)
G78019 NA non-coding downstream 108582 3813935 ~ 3814733 (-)
LOC111193170 NA non-coding downstream 284400 3633094 ~ 3638915 (-)
G78054 NA non-coding upstream 19171 4012752 ~ 4013009 (-)
G78087 NA non-coding upstream 121191 4114772 ~ 4115105 (-)
G78131 NA non-coding upstream 313936 4307517 ~ 4309637 (-)
G78140 klhdc2 non-coding upstream 333399 4326980 ~ 4327648 (-)
G78143 NA non-coding upstream 335511 4329092 ~ 4330615 (-)
G78023 scfd1 other downstream 82745 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 208958 3645097 ~ 3714357 (-)
G77892 NA other downstream 574326 3297582 ~ 3348989 (-)
bmf bmf other downstream 716629 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 878552 2964024 ~ 3044763 (-)
G78083 NA other upstream 51853 4045434 ~ 4206384 (-)
G78297 kdm1a other upstream 1191211 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 3205328 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4482816 8476397 ~ 8517648 (-)
spdya spdya other upstream 4639065 8632646 ~ 8641832 (-)

Expression


Co-expression Network