G78083


Basic Information

Item Value
gene id G78083
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4045434 ~ 4206384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105293
caaaatattgcaatgcacacaacattatgggcgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcgagataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaaactgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgatcaaatcacgacagaattcaatgtgcacctcaactctcctgtttccaccagaactgtctgtcaccacaatcaattattgtggtctaaaaccaggtgtttcagtttcattgtccaacacctgtatttCTTGTGTCAGGAATCagaacattgcaacatgacgtgtttgttTTTACTTGCCTAAAtgatatatcatgcagccctaatatCAATGGCAAACAAGGGCAAAAAGAAAGCACCAACAGATGAATGACCCTAGTGCCAAGCCCTGTTCCAAAGCTCCCGTCCAATCCCAGCTCTCGCTTTTCCACATACTATCGTCAGCCATCCTTTACTTTAACATCTATCGCTTTTAAAATACAGACCATGCCAGACCATCGTCCAATCCAGAGTCCCTATACTGAGAGAACGGACAGAAAGAACTATGATGGAATCATTGGAGTTCCATTGGAGTTCCATTGGAATAGTGATGGACGTCAAATAGGAGTTCCAGAGCCAGAACTCTGGATGTACTGACGGAGTACTGACGGAGGCGTCACTGTGAAGTCCTCCATCAGTCCAATAATGATCTAAAGACTTAAGATTTGTGCTGTTGAAGACTTTTAAAGAATTTTCCTAACGCTCTTGAACTCTGAATGGTACTGAAAAGGATCAAGGACCACAAAGACTTGCGAACTTTCTAAAACAGCCATGATGTGCTGAGCTGGGTCCATGCGCTTGGATTCTTacaaatgatattttattactCCGATGATGAAAAATGACTGCTTTTcagaaactgttaaaaaaatatatatatctctgaACTACCTGAGACCATCCGTTACCTTAACCAGCTGGTTTTTGGAGATGTATTGTAAAGTCACTTTTATTGTTCATAAAGTTTCTGGGGAAGAATCGTCGTCGTTTTCCTCCCTCAAGTTTGTTTTGTTGgtccaaaatatataatatgttgcTCCAGacgattttttaattttttttttttttttcactttgaaCACCcatttaaaagaacaaaaaaatccctcttcattattatattattcaatatacgatatgatataaaACTAGTATgatattataaaatatcaaatatgaGGAGATTATATGCAAATACATTGGGTAGGATATGGCCTAATCGAGTTCTACGAGTTatacacacctttttttttaaactgctcaTCCAAAAGAAAGCACAAGTAATATCACTTATAATCATGACACGCAGTACACACAGTACTTTTCACACATgataccgttttttttttttttttccttcaatttgattaaaaagccac

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105293 True 1575 TUCP 0.39 3 4045434 4206384

Neighbor

gene id symbol gene type direction distance location
mis18bp1 NA coding downstream 38824 3994560 ~ 4006610 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding downstream 53659 3956326 ~ 3991775 (-)
hectd1 hectd1,LOC107582380,LOC107733112,LOC107697712,LOC107719534,LOC107694830,LOC100380626 coding downstream 93241 3917656 ~ 3952193 (-)
strn3 strn3,LOC106611207,LOC107590905 coding downstream 136097 3881319 ~ 3909337 (-)
ankrd9 NA coding downstream 741867 3302159 ~ 3303567 (-)
pole2 pole2 coding upstream 83119 4289503 ~ 4298158 (-)
lrr1 lrr1,LOC102779237 coding upstream 107907 4314291 ~ 4320359 (-)
nemf nemf coding upstream 124398 4330782 ~ 4353248 (-)
wdr20 wdr20 coding upstream 162010 4368394 ~ 4379640 (-)
dync1h1 dync1h1 coding upstream 182021 4388405 ~ 4454570 (-)
G78054 NA non-coding downstream 32425 4012752 ~ 4013009 (-)
G78044 NA non-coding downstream 51853 3923315 ~ 3993581 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding downstream 166180 3876755 ~ 3879254 (-)
LOC111193171 coch non-coding downstream 173006 3870561 ~ 3872428 (-)
G78022 g2e3 non-coding downstream 219819 3823445 ~ 3825615 (-)
G78131 NA non-coding upstream 101133 4307517 ~ 4309637 (-)
G78140 klhdc2 non-coding upstream 120596 4326980 ~ 4327648 (-)
G78143 NA non-coding upstream 122708 4329092 ~ 4330615 (-)
G78241 NA non-coding upstream 232203 4438587 ~ 4518310 (-)
G78265 wars,LOC107088074 non-coding upstream 401524 4607908 ~ 4609149 (-)
G78023 scfd1 other downstream 204864 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 331077 3645097 ~ 3714357 (-)
G77892 NA other downstream 696445 3297582 ~ 3348989 (-)
bmf bmf other downstream 838748 3175798 ~ 3206686 (-)
LOC103029757 LOC108430670,LOC108269994 other downstream 1000671 2964024 ~ 3044763 (-)
G78297 kdm1a other upstream 978408 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 2992525 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4270013 8476397 ~ 8517648 (-)
spdya spdya other upstream 4426262 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 4444244 8650628 ~ 8655017 (-)

Expression


Co-expression Network