G78140 (klhdc2)


Basic Information

Item Value
gene id G78140
gene name klhdc2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4326980 ~ 4327648 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105367
ggcgacacccctgttccttactagtgtagcttaaaatgtgccttattgGATGGAACTCACCGCTCTCTGCTGTGAAAGTAGGTTATTGGCACAGCCTCCAAACACAAATATTTCCCCATCTGGATTTGAACATGCTGTGTGCCAGagtCTGGGACTTTCTTCGTGGTTGTGTTTAAAAGGTCTCCACTCATTCGTACTCACACAGTACAGCCACGCGTCGCTAAGTGTTTCTCTGTTGGTAGTAAATCCCCCGAACAAGAAGATATGGTCATTTGACACAGGTATAAAAGAATGCCAGGAGCGGCCAACTGGACCCTGCTGCGGCACGGACATTTCACTCCA

Function

symbol description
klhdc2 Orthologous to human KLHDC2 (kelch domain containing 2).

NR:

description
PREDICTED: kelch domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105367 True 342 lncRNA 0.48 4 4326980 4327648

Neighbor

gene id symbol gene type direction distance location
lrr1 lrr1,LOC102779237 coding downstream 6621 4314291 ~ 4320359 (-)
pole2 pole2 coding downstream 28822 4289503 ~ 4298158 (-)
mdga2 mdga2,mamdc1 coding downstream 49159 4047063 ~ 4277821 (-)
mis18bp1 NA coding downstream 320370 3994560 ~ 4006610 (-)
heatr5a heatr5a,LOC108412624,LOC107697711,LOC107733168 coding downstream 335205 3956326 ~ 3991775 (-)
nemf nemf coding upstream 3134 4330782 ~ 4353248 (-)
wdr20 wdr20 coding upstream 40746 4368394 ~ 4379640 (-)
dync1h1 dync1h1 coding upstream 60757 4388405 ~ 4454570 (-)
LOC103042641 dio3 coding upstream 184326 4511974 ~ 4514109 (-)
dlk1 NA coding upstream 207280 4534928 ~ 4542877 (-)
G78131 NA non-coding downstream 17343 4307517 ~ 4309637 (-)
G78087 NA non-coding downstream 211875 4114772 ~ 4115105 (-)
G78054 NA non-coding downstream 313971 4012752 ~ 4013009 (-)
G78044 NA non-coding downstream 333399 3923315 ~ 3993581 (-)
G78039 coch,LOC107697714,LOC107719487,LOC107590906,LOC107733111,LOC107694797 non-coding downstream 447726 3876755 ~ 3879254 (-)
G78143 NA non-coding upstream 1444 4329092 ~ 4330615 (-)
G78241 NA non-coding upstream 110939 4438587 ~ 4518310 (-)
G78265 wars,LOC107088074 non-coding upstream 280260 4607908 ~ 4609149 (-)
G78266 NA non-coding upstream 282358 4610006 ~ 4647983 (-)
G78279 NA non-coding upstream 849427 5177075 ~ 5178793 (-)
G78083 NA other downstream 120596 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 486410 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 612623 3645097 ~ 3714357 (-)
G77892 NA other downstream 977991 3297582 ~ 3348989 (-)
bmf bmf other downstream 1120294 3175798 ~ 3206686 (-)
G78297 kdm1a other upstream 857144 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 2871261 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 4148749 8476397 ~ 8517648 (-)
spdya spdya other upstream 4304998 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 4322980 8650628 ~ 8655017 (-)

Expression


Co-expression Network