G78265 (wars,LOC107088074)


Basic Information

Item Value
gene id G78265
gene name wars,LOC107088074
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4607908 ~ 4609149 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105515
TGTTTACTGAGCATTTTATAGCACTGGTCCTTGATGGTTGTGAGTTATGGCCATTTAGGTATTACACAATACCTAAAATAAGATCTGTCCATCTTccacatttgtacatttaaatTAGAAGTTGAAATCCAGCTTCCGTGGAGTCATAAACTGCTTGACCATCTCCTCTGTAACTTGCTTGCGTCTCTCTTGGTGGGCTGCAATCATGGGTTGAAGATTCTCAATCAGACGTTTCTTCAATTCACCAGTCAGAAGAGCTCCACTTGAATAAtcCTGTCTCATCTTCTCCAGCTCCTCGTCATCCTCAAGGAAGAAGGTCAGGTACATGAACGACACATCCACATCTGGGTTTCCTCCGTACTTCCTGTGTTCCTCTACTGTGTCTTTTCCTCCAGAGAATGCATGCTTATTGACCTTGTTCTTGATCTGTTTGGGTGTATCTGTTAGGAAGATAGAAGTGTTAGCGTCGCTGGCGCTCATCTTGGTCTGAGCTCCTTGCAGGGCAGGGAAAAAGGTGGAGTGCAGCAGAGCAGGTTTGGGGTAGCCTATCCGAGGAGCTACGTCTCGGGTCATGCGGAAATAGGGGtcctggaaaaaattaaaaatatcaatttTAATAAGAATCAGAATTACTGCCAATgccatatttattttatcattttaatcaaa

Function

symbol description
wars Enables tryptophan-tRNA ligase activity. Involved in tryptophanyl-tRNA aminoacylation. Predicted to be located in cytosol and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and skeleton. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 9. Orthologous to human WARS1 (tryptophanyl-tRNA synthetase 1).

NR:

description
PREDICTED: tryptophan--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105515 True 669 lncRNA 0.43 3 4607908 4609149

Neighbor

gene id symbol gene type direction distance location
wdr25 wdr25 coding downstream 9008 4591368 ~ 4598900 (-)
dlk1 NA coding downstream 65031 4534928 ~ 4542877 (-)
LOC103042641 dio3 coding downstream 93799 4511974 ~ 4514109 (-)
dync1h1 dync1h1 coding downstream 153338 4388405 ~ 4454570 (-)
wdr20 wdr20 coding downstream 228268 4368394 ~ 4379640 (-)
slc25a47 NA coding upstream 4563 4613712 ~ 4616794 (-)
fancm NA coding upstream 14952 4624101 ~ 4665487 (-)
togaram1 NA coding upstream 57422 4666571 ~ 4678410 (-)
luzp1 luzp1 coding upstream 601580 5210729 ~ 5262996 (-)
LOC103024242 LOC108430197 coding upstream 2080155 6689304 ~ 6707961 (-)
G78241 NA non-coding downstream 89598 4438587 ~ 4518310 (-)
G78143 NA non-coding downstream 277293 4329092 ~ 4330615 (-)
G78140 klhdc2 non-coding downstream 280260 4326980 ~ 4327648 (-)
G78131 NA non-coding downstream 298271 4307517 ~ 4309637 (-)
G78087 NA non-coding downstream 492803 4114772 ~ 4115105 (-)
G78266 NA non-coding upstream 857 4610006 ~ 4647983 (-)
G78279 NA non-coding upstream 567926 5177075 ~ 5178793 (-)
G78296 NA non-coding upstream 579859 5189008 ~ 5204565 (-)
G78302 NA non-coding upstream 595498 5204647 ~ 5204974 (-)
G78298 NA non-coding upstream 595937 5205086 ~ 5207646 (-)
G78083 NA other downstream 401524 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 767338 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 893551 3645097 ~ 3714357 (-)
G77892 NA other downstream 1258919 3297582 ~ 3348989 (-)
bmf bmf other downstream 1401222 3175798 ~ 3206686 (-)
G78297 kdm1a other upstream 575643 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 2589760 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 3867248 8476397 ~ 8517648 (-)
spdya spdya other upstream 4023497 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 4041479 8650628 ~ 8655017 (-)

Expression


Co-expression Network