G78279


Basic Information

Item Value
gene id G78279
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 5177075 ~ 5178793 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105532
TGACGTGAGCAGGTGAGCCTGCCGGACAGGTAACTGCGCGAGCTCCGGCTCAGCGATTTGGGTTGTTTATACAGGAAATCTTAATTTCTATAAGATTTTCTGTGTTTTGGATTTTGGATTGTGTAGCTGGGTTGTTTAGCAGCTGATCTCCAGCTCCTGATCCAGGATGAAGTCTGATGGTGAATCAGCAAACAGGCCGGATAACACGGCCTTCACCCAGCAGCGTCTCCCTGCGTGGCAGCCCATGCTCTCTGCTGGGATCGTCATCCCGCTCTTCACTCTCATCGGCCTGGCTTTTATCGGCA

Function

GO: NA

KEGG:

id description
ko04530 Tight junction

RNA

RNA id representative length rna type GC content exon number start site end site
TU105532 True 305 lncRNA 0.52 2 5177075 5178793

Neighbor

gene id symbol gene type direction distance location
togaram1 NA coding downstream 498665 4666571 ~ 4678410 (-)
fancm NA coding downstream 511588 4624101 ~ 4665487 (-)
slc25a47 NA coding downstream 560281 4613712 ~ 4616794 (-)
wdr25 wdr25 coding downstream 578175 4591368 ~ 4598900 (-)
dlk1 NA coding downstream 634198 4534928 ~ 4542877 (-)
luzp1 luzp1 coding upstream 31936 5210729 ~ 5262996 (-)
LOC103024242 LOC108430197 coding upstream 1510511 6689304 ~ 6707961 (-)
LOC103024548 NA coding upstream 1534663 6713456 ~ 6722276 (-)
nphp1 nphp1 coding upstream 1570325 6749118 ~ 6768199 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 1716135 6894928 ~ 6924055 (-)
G78266 NA non-coding downstream 529092 4610006 ~ 4647983 (-)
G78265 wars,LOC107088074 non-coding downstream 567926 4607908 ~ 4609149 (-)
G78241 NA non-coding downstream 658765 4438587 ~ 4518310 (-)
G78143 NA non-coding downstream 846460 4329092 ~ 4330615 (-)
G78140 klhdc2 non-coding downstream 849427 4326980 ~ 4327648 (-)
G78296 NA non-coding upstream 10215 5189008 ~ 5204565 (-)
G78302 NA non-coding upstream 25854 5204647 ~ 5204974 (-)
G78298 NA non-coding upstream 26293 5205086 ~ 5207646 (-)
G78309 NA non-coding upstream 127243 5306036 ~ 5306240 (-)
G78316 NA non-coding upstream 156057 5334850 ~ 5345392 (-)
G78083 NA other downstream 970691 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 1336505 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 1462718 3645097 ~ 3714357 (-)
G77892 NA other downstream 1828086 3297582 ~ 3348989 (-)
bmf bmf other downstream 1970389 3175798 ~ 3206686 (-)
G78297 kdm1a other upstream 5999 5184792 ~ 5186358 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 2020116 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 3297604 8476397 ~ 8517648 (-)
spdya spdya other upstream 3453853 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 3471835 8650628 ~ 8655017 (-)

Expression


Co-expression Network