G78296


Basic Information

Item Value
gene id G78296
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 5189008 ~ 5204565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105552
tatcaccctgtctaaagggtgtttggacaaactgaataaaactgctTGATCTTGGAAAGCTGCAGTAGAACAGAGTTGGGCTATTCAAccaaggttagtactctttaacatgttttactacaccaaaagtcaatttcacaccagagttctcctttaaaataaGCATCCGTCCTGAACATACAGTCTATATTGATTAATTAAAGGACCAATGGAATCACTCAGATCATGTTTAGAaatttaggaatattttattttattatttcatatttccaaaaaaaagctttacttAAGCAGCTACTGTTTCTCCATCTTCAGCTAAACTCATCTAGAGgtgaacaacaaaagaaaaaagtggaGATCAGCAGAATTCAGAGCTCACACTGACGGGGTAATCTACCACACCTCTGTTCCTCTCAGCCTCACTTCTCCACCTCAGCCACAGCTGGGTTTTAATCAGAGTTCAGAGCTGTGAGTT
>TU105553
tatcaccctgtctaaagggtgtttggacaaactgaataaaactgctTGATCTTGGAAAGCTGCAGTAGAACAGAGTTGGGCTATTCAAccaaggttagtactctttaacatgttttactacaccaaaagtcaatttcacaccagagttctcctttaaaataaGCATCCGTCCTGAACATACAGTCTATATTGATTAATTAAAGGACCAATGGAATCACTCAGATCATGTTTAGAaatttaggaatattttattttattatttcatatttccTCTTAGAGAAATCACCCTAATTCCAGTCTAAATATCTAATATTACCCAGTATAAAATTATTCTAAGGATATTTTAACTAACAATAAAGTAAAACGAATGATCGTAGCAAATACTAGATATTTAATGTAGATTTAAGATGATTTCACAaaactaattgtttttttttatttatttttctgaggagatacaaggttttgttttttagtcatgatCTTACATTTAAAGCAGTACTGTGTGAACGTTTTGGCACCTGTCTAAAGCATATCTGATAAGGGATTATTGAATAAGATCAttcaaaatacattaataatatcaATACTACAGTAAATTGAAATAATTCATGTCACTGTGTTAATTCtgaatcaattaaataaaatgcatgtgTCCCTAAAACTTCTCACAGTACTGAAGTTATGtgcatatataaacacacacacacacacacacgcagtgaGACTGTGGGTCTTTTATGATCAAACAAGGGAGGAtgtatttttggtatttttgctAAAGCAGTGTTTAGCCCTCATTgttatacagtgtgtgtacgagtgtgtgtgataatctctgtatatcagcaataccccacacacacacacgcgcgcgcacgTTCACCGTCCCGCCGTTTTAGTGTAAATGTCCTGTGCATGTTTAACTCATTCTGCATGTTGCTATAGCGATCTGTCTGTAGGCTGCTGCTGATTGGATAGCAGAACTGTGTATTCCCACAAATAATAAAGATCAAAGTGTTTATACCctgaaaaaaa

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU105552 False 475 lncRNA 0.38 2 5202095 5204565
TU105553 True 1038 lncRNA 0.34 2 5189008 5204565

Neighbor

gene id symbol gene type direction distance location
togaram1 NA coding downstream 510598 4666571 ~ 4678410 (-)
fancm NA coding downstream 523521 4624101 ~ 4665487 (-)
slc25a47 NA coding downstream 572214 4613712 ~ 4616794 (-)
wdr25 wdr25 coding downstream 590108 4591368 ~ 4598900 (-)
dlk1 NA coding downstream 646131 4534928 ~ 4542877 (-)
luzp1 luzp1 coding upstream 6164 5210729 ~ 5262996 (-)
LOC103024242 LOC108430197 coding upstream 1484739 6689304 ~ 6707961 (-)
LOC103024548 NA coding upstream 1508891 6713456 ~ 6722276 (-)
nphp1 nphp1 coding upstream 1544553 6749118 ~ 6768199 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 1690363 6894928 ~ 6924055 (-)
G78279 NA non-coding downstream 10215 5177075 ~ 5178793 (-)
G78266 NA non-coding downstream 541025 4610006 ~ 4647983 (-)
G78265 wars,LOC107088074 non-coding downstream 579859 4607908 ~ 4609149 (-)
G78241 NA non-coding downstream 670698 4438587 ~ 4518310 (-)
G78143 NA non-coding downstream 858393 4329092 ~ 4330615 (-)
G78302 NA non-coding upstream 82 5204647 ~ 5204974 (-)
G78298 NA non-coding upstream 521 5205086 ~ 5207646 (-)
G78309 NA non-coding upstream 101471 5306036 ~ 5306240 (-)
G78316 NA non-coding upstream 130285 5334850 ~ 5345392 (-)
G78345 qkia,LOC108269894,LOC108413473 non-coding upstream 247548 5452113 ~ 5477842 (-)
G78297 kdm1a other downstream 2650 5184792 ~ 5186358 (-)
G78083 NA other downstream 982624 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 1348438 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 1474651 3645097 ~ 3714357 (-)
G77892 NA other downstream 1840019 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 1994344 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 3271832 8476397 ~ 8517648 (-)
spdya spdya other upstream 3428081 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 3446063 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 4830121 10034686 ~ 10071884 (-)

Expression


Co-expression Network