LOC111193175


Basic Information

Item Value
gene id LOC111193175
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6770121 ~ 6772903 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105782
GTGCAGAAGGCGTTTGAGACTCGCCCACAGCTAGACGCCCTCTCTCAGGCTGTTCGCTGCAGCGCGCTGGGGAGCAgctggagatatttggagtgccgCTGCGGAGGTGAACATGGCCGACGTGTCGGAGAGGACGTTACAGGTCGCTATCCTGGTCTCGTTTGCCACGGGCTTCGTCGCGGGCTGGCAGGCCAACAGGATGCGCAGGAGGTTCCTGGACTGGCGGAAGAAACGGCTCCAGGACAAGCTGGCGGAGACGCAGAAGAAGCTGGACCTGTCGTGACCTGCGGGGTCAGGTCTGATAACTGCCGGCCTGGCCGCATGAAATCAATGGTGTCCTTGCCCTGCTGAGACCCCCTTCGACCCCTCTGACCCCTTTGATGGACTCAACTCTGGATAAGAAGTCACCTTCAGCTGTTCTGCCAATCTTCTGTTCCCTCCTGAGACCTTTAAACACTATGCACACACTGCAGTGTTGCATTGCAGTGCAGTtctcaaaaacatattttttatggggataaatgttttattttgttgtttttttaataacaagTTGTTTACAAGGTATTATTCTAAGCCATAATATTGCTGTTAATAAGCTTGTACcatcatgttggaataaaataaactattttgt
>TU105783
CCTTTATAGGACGCATCCCAAACGGCTTCTTGCTCCCTATCTAGAACACTAAAACGCGAAATGAAATCTCTAAAAGGCATCTCGAGACTCTTTAGTGCACTACACGTCAGTGCAGAAGGCGTTTGAGACTCGCCCACAGCTAGACGCCCTCTCTCAGGCTGTTCGCTGCAGCGCGCTGGGGAGCAgctggagatatttggagtgccgCTGCGGAGGTGAACATGGCCGACGTGTCGGAGAGGACGTTACAGGTCGCTATCCTGGTCTCGTTTGCCACGGGCTTCGTCGCGGGCTGGCAGGCCAACAGGATGCGCAGGAGGTTCCTGGACTGGCGGAAGAAACGGCTCCAGGACAAGCTGGCGGAGACGCAGAAGAAGCTGGACCTGTCGTGACCTGCGGGGTCAGGTCTGATAACTGCCGGCCTGGCCGCATGAAATCAATGGTGTCCTTGCCCTGCTGAGACCCCCTTCGACCCCTCTGACCCCTTTGATGGACTCAACTCTGGATAAGAAGTCACCTTCAGCTGTTCTGCCAATCTTCTGTTCCCTCCTGAGACCTTTAAACACTATGCACACACTGCAGTGTTGCATTGCAGTGCAGTtctcaaaaacatattttttatggggataaatgttttattttgttgtttttttaataacaagTTGTTTACAAGGTATTATTCTAAGCCATAATATTGCTGTTAATAAGCTTGTACcatcatgttggaataaaataaactattttgt
>TU105784
GTGCAGAAGGCGTTTGAGACTCGCCCACAGCTAGACGCCCTCTCTCAGGCTGTTCGCTGCAGCGCGCTGGGGAGCAgctggagatatttggagtgccgCTGCGGAGGTGAACATGGCCGACGTGTCGGAGAGGACGTTACAGGTCGCTATCCTGGTCTCGTTTGCCACGGGCTTCGTCGCGGGCTGGCAGGCCAACAGGATGCGCAGGAGGTTCCTGGACTGGCGGAAGAAACGGCTCCAGGACAAGCTGGCGGAGACGCAGAAGAAGCTGGACCTGTCGTGACCTGCGGGGTCAGGTCTGATAACTGCCGGCCTGGCCGCATGAAATCAATGGTGTCCTTGCCCTGCTGAGACCCCCTTCGACCCCTCTGACCCCTTTGATGGACTCAACTCTGGATAAGAAGTCACCTTCAGCTGTTCTGCCAATCTTCTGTTCCCTCCTGAGACCTTTAAACACTATGCACACACTGCAGTGTTGCATTGCAGTGCAGTtctcaaaaacatattttttatggggataaatgttttattttgttgtttttttaataacaagTTGTTTACAAGGTATTATTCTAAGCCATAATATTGCTGTTAATAAGCTTGTACcatcatgttggaataaaataaactattttgttACTTTAAATGTATGCTATTGTATTAACTTGTCCACAAGAAACGCTGTATTCCTGAAGCACTGCAAAAATTAtaagatgttttttgttgttaaactgtagtttgattttttttttgtcaatattacaaaaaaaaatctgtttttctgttttttatagaTTGTGTACTGTCTTCCAGAATCTGCTATTGATTAATTGAATCCATTCTCCCATCTACCAGAATCTAAACACCAGCCAGTGTGTTCATGGCAAATCAATGTGAAATGATCATGAGTTGCAATGAGGCCTGATGGTGGGTGCTAGATGGTTGGGACATCCCTT
>TU105785
GTGCAGAAGGCGTTTGAGACTCGCCCACAGCTAGACGCCCTCTCTCAGGCTGTTCGCTGCAGCGCGCTGGGGAGCAgctggagatatttggagtgccgCTGCGGAGGTGAACATGGCCGACGTGTCGGAGAGGACGTTACAGGTCGCTATCCTGGTCTCGTTTGCCACGGGCTTCGTCGCGGGCTGGCAGGCCAACAGGATGCGCAGGAGGTTCCTGGACTGGCGGAAGAAACGGCTCCAGGACAAGCTGGCGGAGACGCAGAAGAAGCTGGACCTGTCGTGACCTGCGGGGTCAGGTCTGATAACTGCCGGCCTGGCCGCATGAAATCAATGGTGTCCTTGCCCTGCTGAGACCCCCTTCGACCCCTCTGACCCCTTTGATGGACTCAACTCTGGATAAGAAGTCACCTTCAGCTGTTCTGCCAATCTTCTGTTCCCTCCTGAGACCTTTAAACACTATGCACACACTGCAGTGTTGCATTGCAGTGCAGTtctcaaaaacatattttttatggggataaatgttttattttgttgtttttttaataacaagTTGTTTACAAGGTATTATTCTAAGCCATAATATTGCTGTTAATAAGCTTGTACcatcatgttggaataaaataaactattttgttACTTTAAATGTATGCTATTGTATTAACTTGTCCACAAGAAACGCTGTATTCCTGAAGCACTGCAAAAATTAtaagatgttttttgttgttaaactgtagtttgattttttttttgtcaatattacaaaaaaaaatctgtttttctgttttttatagaTTGTGTACTGTCTTCCAGAATCTGCTATTGATTAATTGAATCCATTCTCCCATCTACCAGAATCTAAACACCAGCCAGTGTGTTCATGGCAAATCAATGTGAAATGATCATGAGTTGCAATGAGGCCTGATGGTGGGTGCTAGATGGTTGGGACATCCCTTAATCCATAGTGTCACATGTGGATTATCAATGCAGTTTGTCATAGGACAGAGGTTGCTAACTTGGAGGTCATAACCCTCAAGAAGGTCCTGTCATAGTCCCTGGgaccacaagaaaaaaaaaagaacattgggT
>XR_002650304.1
AAGGCTTTCTGTAGTCCCCCTGATCACGTGGCCCTTTATAGGACGCATCCCAAACGGCTTCTTGCTCCCTATCTAGAACACTAAAACGCGAAATGAAATCTCTAAAAGGCATCTCGAGACTCTTTAGTGCACTACACGTCAGTGCAGAAGGCGTTTGAGACTCGCCCACAGCTAGACGCCCTCTCTCAGGCTGTTCGCTGCAGCGCGCTGGGGAGCAgctggagatatttggagtgccgCTGCGGAGGTGAACATGGCCGACGTGTCGGAGAGGACGTTACAGGTCGCTATCCTGGTCTCGTTTGCCACGGGCTTCGTCGCGGGCTGGCAGGCCAACAGGATGCGCAGGAGGTTCCTGGACTGGCGGAAGAAACGGCTCCAGGACAAGCTGGCGGAGACGCAGAAGAAGCTGGACCTGTCGTGACCTGCGGGGTCAGGTCTGATAACTGCCGGCCTGGCCGCATGAAATCAATGGTGTCCTTGCCCTGCTGAGACCCCCTTCGACCCCTCTGACCCCTTTGATGGACTCAACTCTGGATAAGAAGTCACCTTCAGCTGTTCTGCCAATCTTCTGTTCCCTCCTGAGACCTTTAAACACTATGCACACACTGCAGTGTTGCATTGCAGTGCAGTtctcaaaaacatattttttatggggataaatgttttattttgttgtttttttaataacaagTTGTTTACAAGGTATTATTCTAAGCCATAATATTGCTGTTAATAAGCTTGTACcatcatgttggaataaaataaactattttgttACTTTAAATGTATGCTATTGTATTAACTTGTCCACAAGAAACGCTGTATTCCTGAAGCACTGCAAAAATTAtaagatgttttttgttgttaaa

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105782 False 637 lncRNA 0.51 2 6770573 6772762
TU105783 False 746 lncRNA 0.50 2 6770573 6772871
TU105784 False 956 lncRNA 0.45 2 6770254 6772762
TU105785 True 1089 lncRNA 0.45 2 6770121 6772762
XR_002650304.1 False 872 lncRNA 0.48 2 6770479 6772903

Neighbor

gene id symbol gene type direction distance location
nphp1 nphp1 coding downstream 1922 6749118 ~ 6768199 (-)
LOC103024548 NA coding downstream 47845 6713456 ~ 6722276 (-)
LOC103024242 LOC108430197 coding downstream 62160 6689304 ~ 6707961 (-)
luzp1 luzp1 coding downstream 1507125 5210729 ~ 5262996 (-)
togaram1 NA coding downstream 2091711 4666571 ~ 4678410 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 122025 6894928 ~ 6924055 (-)
acss1 NA coding upstream 156867 6929770 ~ 6963428 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding upstream 318142 7091045 ~ 7193590 (-)
LOC111193180 NA coding upstream 503497 7276400 ~ 7277784 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding upstream 543643 7316546 ~ 7337779 (-)
G78466 NA non-coding downstream 1160 6768760 ~ 6768961 (-)
G78450 NA non-coding downstream 21706 6747959 ~ 6748415 (-)
G78464 NA non-coding downstream 22339 6746078 ~ 6747782 (-)
G78463 NA non-coding downstream 24565 6744965 ~ 6745556 (-)
G78455 NA non-coding downstream 40060 6729839 ~ 6730061 (-)
G78492 NA non-coding upstream 63229 6836132 ~ 6838095 (-)
G78560 NA non-coding upstream 113202 6886105 ~ 6886572 (-)
G78563 NA non-coding upstream 117275 6890178 ~ 6890405 (-)
G78566 NA non-coding upstream 125849 6898752 ~ 6906864 (-)
G78568 NA non-coding upstream 154470 6927373 ~ 6928044 (-)
G78297 kdm1a other downstream 1583763 5184792 ~ 5186358 (-)
G78083 NA other downstream 2563737 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 2929551 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3055764 3645097 ~ 3714357 (-)
G77892 NA other downstream 3421132 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 426006 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1703494 8476397 ~ 8517648 (-)
spdya spdya other upstream 1859743 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1877725 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 3261783 10034686 ~ 10071884 (-)

Expression


Co-expression Network