G78492


Basic Information

Item Value
gene id G78492
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6836132 ~ 6838095 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105798
ggctgttgcaaacacccaaatatttagaactaaaaatgatatGTGAATAGCATACATGAGGGTTTGTAATCACACATGGTGCCCCCTAGATTCAGCAAACCTAGGGttccaataaaacattttataaatgtaaatttactaGTAAAATCAATCAAGGAGTCAAGAAATTACATTGGTATATGGTACATCTGTGGTTTTCTCACTttTTATACAAATCCTGTATATTAATGAAACACCTAGTATTCAAAATGAGTCATTAACTTGATTCATAACAGTTCAAAAGAATATTTCTTGTCCGCCTGCATCCGTCACAACTTTAAACACAAGTCAAAGTCTGGAGATTTCTGAGCAGAACAGAACACCAGCATGTGATGTTGTTTTGTCCTGATCCTTCACCCTGTATTAATTCTTTACTACAGGCGTCTGTGTCTTAACCCATCCTTCCATTCCTCGttctattaaataatttattaaaacctaATTTAATAGTACACAGCGTTAACTTCTCAGCAGACATTAGACTGTAGGAGGTAGAGTCTACTGCTGGGCGCAGCTGTGGCGTGATTGGGCAAGGCTCAGACTGAGTTCCACCTTTGACCACTGAAAATAGTAGACACATCCATTCAGACACACTCAAAGGCTAAACTGAATAAATCTGCCGGCTCTTTTACTGTTAGTGTGGGACGTGCAGTTGTTGGGACCTTATACTCATTCAGAGCTCAGAAATTAAGAGTCTGGATTTAGTCTAcactacagtttaaaaaaagggagtttaaaaaaaggagagaacaTTTGTTTGAACTGCATGAAAAGAAGAAGTCTTTGTTGTAATAAAAGCAGTAGCAAAGCAATTTACATTCAGCCAAGTTGTACTGAACTCTGAAcctaaaatatactgtattttttctgtCACATAATATTACATACcaacaaaatagcaactttaaataaaacactataaatacaCTATAATAATTAGGAGGTGGATAAACAATAAGCTTACACgtcatttttttctgtggtactcctaaaatatttatttttaaaagtgcatATTCTACACAATTTGGTCACAACAAAGCCAAAACAATCCAACATAGCTCAGGTTCAACTGCTTTATTTCAcggtgtatgtatgtatgtatgtatgtatgtatgatggAACAGGCACTAATAAGTCATTCTATCAGTCTGCGAGTTTCATTCATCAGGATTAAGCTAAATTGCATACGTATACCTTCTTATTTAAGACAGCTACACACAGATTGCACTGCCTCTAaaaagagattgagaaagagataaaacagGCTCACCTGCAGTGATGCAATACCTCAGGTTACTACAGGTAAGTTCAAGAGGTCAGGATCCAAGGCTGCTCCACTAAACTGCTCTGAACAGCTCTGTTAAGCTAGACGTCCATTCTCTACTGAACAGAACTTTCAGAGTCTTTGGAGTTTCCGCTGAAAGGCTCCCCCAAAGCATTGGCCAATCAACTTGGAGAGATTTGCATGTTCAGATTTATGACAGTTTATCCAGCCTGTAATGTCTCTGAAGCGAAAATTAAGCATTTCCATTACAGGTAATACTGTAAAACTCCCTTTTCATATAACAGATGTAATTATGGTAACTGGAATAAGTGTGTTAAAGATTAACTGGCTGCATTGATGCAGTACTGTACAGCGCCTGTGTTGCACCATGCTGTGATTAGCATACCAAACCGGATTAGTCTATTTACACACACCCGTTTTCAGGCAAGTATGAATTTGggtggagagaaaaaaatactctACACAGTTAGACTTTTCTTAATGCTCTGAAAAAACACTGCAGTCATTATCGCTGTGGGAATCCTCCATAAGCACCCTGCACCTAGCCTTTTTGAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105798 True 1885 lncRNA 0.37 2 6836132 6838095

Neighbor

gene id symbol gene type direction distance location
nphp1 nphp1 coding downstream 67933 6749118 ~ 6768199 (-)
LOC103024548 NA coding downstream 113856 6713456 ~ 6722276 (-)
LOC103024242 LOC108430197 coding downstream 128171 6689304 ~ 6707961 (-)
luzp1 luzp1 coding downstream 1573136 5210729 ~ 5262996 (-)
togaram1 NA coding downstream 2157722 4666571 ~ 4678410 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 56833 6894928 ~ 6924055 (-)
acss1 NA coding upstream 91675 6929770 ~ 6963428 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding upstream 252950 7091045 ~ 7193590 (-)
LOC111193180 NA coding upstream 438305 7276400 ~ 7277784 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding upstream 478451 7316546 ~ 7337779 (-)
LOC111193175 NA non-coding downstream 63229 6770121 ~ 6772903 (-)
G78466 NA non-coding downstream 67171 6768760 ~ 6768961 (-)
G78450 NA non-coding downstream 87717 6747959 ~ 6748415 (-)
G78464 NA non-coding downstream 88350 6746078 ~ 6747782 (-)
G78463 NA non-coding downstream 90576 6744965 ~ 6745556 (-)
G78560 NA non-coding upstream 48010 6886105 ~ 6886572 (-)
G78563 NA non-coding upstream 52083 6890178 ~ 6890405 (-)
G78566 NA non-coding upstream 60657 6898752 ~ 6906864 (-)
G78568 NA non-coding upstream 89278 6927373 ~ 6928044 (-)
G78639 NA non-coding upstream 502584 7340679 ~ 7340982 (-)
G78297 kdm1a other downstream 1649774 5184792 ~ 5186358 (-)
G78083 NA other downstream 2629748 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 2995562 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3121775 3645097 ~ 3714357 (-)
G77892 NA other downstream 3487143 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 360814 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1638302 8476397 ~ 8517648 (-)
spdya spdya other upstream 1794551 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1812533 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 3196591 10034686 ~ 10071884 (-)

Expression


Co-expression Network