G78568


Basic Information

Item Value
gene id G78568
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6927373 ~ 6928044 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105902
ataaatcttaaagaaaaaaaaagggcacGCAGTTGTGTATGGAAAACGTGTCATCATATTTGAATTTTATAATggaattttataaatgtatgtattatatttcATATGTTTAGAAATACTATCATTTCACAGTGTGAAAGATGTTATCCCAAGTCATTTCAgagcaaaacagcaaaaaaagtaaatcgtttttttttcataatatgaCCCTGATGGGGACCTGCTCTAGTTTGCCACTAGATGTTCAAATCTTGTGTTGGATGGCTGCGTCATAACATGGGTTAGTTCTTCTATAATGTTGAATTGTGTAAagttaaagcattaaaacactGCACACTGCAGAGCCTTGACACACCAAGACACACCAAGCTTTTGGAATACTGGtataaaatgctgattttataaattatatttggtTTCTAGTGAATTTGGTTGCTTTAGGTGCTGAAACATTAGAGATTTTTAATCTCGCCTGATGTGTCCTCGTGCCTTACTACCAAGAATGCACAGAATAGCGTCCATAAATAAGagctataatattaaaataacagaaaattgCAGTcatgtattaatttgtatttgattaaaaGTTCTGTTATTAATTGTATGTTATGTGTGTGAAATATTGCATATGTATTTCTAATGCCTTACCTCTTTTGCCTTAACTGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105902 True 672 lncRNA 0.32 1 6927373 6928044

Neighbor

gene id symbol gene type direction distance location
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding downstream 3318 6894928 ~ 6924055 (-)
nphp1 nphp1 coding downstream 159174 6749118 ~ 6768199 (-)
LOC103024548 NA coding downstream 205097 6713456 ~ 6722276 (-)
LOC103024242 LOC108430197 coding downstream 219412 6689304 ~ 6707961 (-)
luzp1 luzp1 coding downstream 1664377 5210729 ~ 5262996 (-)
acss1 NA coding upstream 1726 6929770 ~ 6963428 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding upstream 163001 7091045 ~ 7193590 (-)
LOC111193180 NA coding upstream 348356 7276400 ~ 7277784 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding upstream 388502 7316546 ~ 7337779 (-)
qrsl1 qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393 coding upstream 462492 7390536 ~ 7410350 (-)
G78566 NA non-coding downstream 20509 6898752 ~ 6906864 (-)
G78563 NA non-coding downstream 36968 6890178 ~ 6890405 (-)
G78560 NA non-coding downstream 40801 6886105 ~ 6886572 (-)
G78492 NA non-coding downstream 89278 6836132 ~ 6838095 (-)
LOC111193175 NA non-coding downstream 154470 6770121 ~ 6772903 (-)
G78639 NA non-coding upstream 412635 7340679 ~ 7340982 (-)
G78638 NA non-coding upstream 415121 7343165 ~ 7346439 (-)
G78642 NA non-coding upstream 433730 7361774 ~ 7362155 (-)
G78643 NA non-coding upstream 434175 7362219 ~ 7362436 (-)
G78861 NA non-coding upstream 811972 7740016 ~ 7740593 (-)
G78297 kdm1a other downstream 1741015 5184792 ~ 5186358 (-)
G78083 NA other downstream 2720989 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3086803 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3213016 3645097 ~ 3714357 (-)
G77892 NA other downstream 3578384 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 270865 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1548353 8476397 ~ 8517648 (-)
spdya spdya other upstream 1704602 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1722584 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 3106642 10034686 ~ 10071884 (-)

Expression


Co-expression Network