LOC111193177 (kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792)


Basic Information

Item Value
gene id LOC111193177
gene name kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7198909 ~ 7220854 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105931
TTATCAACCGAGACACCCGTgggaggcgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcgcgcgcgcgcgcgcatGGTCTCTCCTCCTCGGCTGCCGGAGGAGGAGAGTAGAGCCccggtgctgctgctgctgctgctggatccGAGCTGGAGAGGATCAGCGCTGAGGAGCTGCTCGCCTGCCCGACCGAGGAGCCATGGCGGGCGGCCGCCGGGGTCTGGTGGCCCCGCAGAACACTTTCCTGGAGAACATCGTGCGGAGGTCTAACGACACTAACTTTGTGCTGGGGAATGCACAGATCGTGGACTGGCCCATCGTCTACAGTAACGATGGCTTCTGCAAACTCTCCGGATATCACCGTGCAGAGGTCATGCAGAAGAGCAGCACCTGCAGCTTCATGTACGGAGAGCTCACGGACAAAGACACGACGGAAAAAGTTCGACTGACCTTTGAAAACTATGAGATGAACTCGTTTGAAATCCTGATGTATAAAAAGAATAGTGAGTACTGAAGctgctgctacacacacacacacacacaca
>XM_022672648.1
GGAGGAGAGTAGAGCCccggtgctgctgctgctgctgctggatccGAGCTGGAGAGGATCAGCGCTGAGGAGCTGCTCGCCTGCCCGACCGAGGAGCCATGGCGGGCGGCCGCCGGGGTCTGGTGGCCCCGCAGAACACTTTCCTGGAGAACATCGTGCGGAGGTCTAACGtttGGACATTATCACATAGACAGACAGACACTAACTTTGTGCTGGGGAATGCACAGATCGTGGACTGGCCCATCGTCTACAGTAACGATGGCTTCTGCAAACTCTCCGGATATCACCGTGCAGAGGTCATGCAGAAGAGCAGCACCTGCAGCTTCATGTACGGAGAGCTCACGGACAAAGACACGACGGAAAAAGTTCGACTGACCTTTGAAAACTATGAGATGAACTCGTTTGAAATCCTGATGTATAAAAAGAATAGTGAGTACTGAAGctgctgctacacacacacacacacacacacatccatctGGGCTGTGGGTAATAGGTCCTAGCACTGTGCTTTATTATGCTAATGGTTTTGCGtgagctttatgaatatgcatgAGGTGGAGTTCAGGCCGAGCAGCGTGTTTACTTCTGCAGAGGAACAACTTTAACAGCGCTAATCTGTCGGCCAGCGACGACATAATGAGAGTTTAGTGTGTGAGTTGTCCTCGGCGTGGACCGAATGTTCCTGCAGTGACGGGAACGGGACAGTACGGAACGCCGGAGAAGAAAGGTGATGTTTAGATAAATAACTGTGTTTATCtgagaaaataaatcaataaaaactgGTGTTTGTTGGGTGTGAGTTTAAGTGACAGTGAAATGTGCAACAGTGTGTTTGGAGTTGGGGGTTCaagtgtgtgacagagagaaacagagaaagtgtgCATAAGAGAgggatatgaaaaaaaaag
>XM_022672649.1
GGAGGAGAGTAGAGCCccggtgctgctgctgctgctgctggatccGAGCTGGAGAGGATCAGCGCTGAGGAGCTGCTCGCCTGCCCGACCGAGGAGCCATGGCGGGCGGCCGCCGGGGTCTGGTGGCCCCGCAGAACACTTTCCTGGAGAACATCGTGCGGAGGTCTAACGACACTAACTTTGTGCTGGGGAATGCACAGATCGTGGACTGGCCCATCGTCTACAGTAACGATGGCTTCTGCAAACTCTCCGGATATCACCGTGCAGAGGTCATGCAGAAGAGCAGCACCTGCAGCTTCATGTACGGAGAGCTCACGGACAAAGACACGACGGAAAAAGTTCGACTGACCTTTGAAAACTATGAGATGAACTCGTTTGAAATCCTGATGTATAAAAAGAATAGTGAGTACTGAAGctgctgctacacacacacacacacacacacatccatctGGGCTGTG

Function

symbol description
kcnh1 Enables delayed rectifier potassium channel activity and phosphatidylinositol bisphosphate binding activity. Involved in several processes, including cellular response to calcium ion; phosphatidylinositol-mediated signaling; and potassium ion transmembrane transport. Located in early endosome membrane. Is integral component of plasma membrane. Part of voltage-gated potassium channel complex. Implicated in colorectal adenocarcinoma. Biomarker of hepatocellular carcinoma and renal cell carcinoma.

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 1 isoform X2

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0018106 peptidyl-histidine phosphorylation biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105931 False 545 TUCP 0.57 3 7199349 7220854
XM_022672648.1 True 911 mRNA 0.49 4 7198909 7220753
XM_022672649.1 False 461 mRNA 0.55 3 7199332 7220753

Neighbor

gene id symbol gene type direction distance location
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding downstream 5319 7091045 ~ 7193590 (-)
acss1 NA coding downstream 235481 6929770 ~ 6963428 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding downstream 274854 6894928 ~ 6924055 (-)
nphp1 nphp1 coding downstream 430710 6749118 ~ 6768199 (-)
LOC103024548 NA coding downstream 476633 6713456 ~ 6722276 (-)
LOC111193180 NA coding upstream 55546 7276400 ~ 7277784 (-)
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding upstream 95692 7316546 ~ 7337779 (-)
qrsl1 qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393 coding upstream 169682 7390536 ~ 7410350 (-)
crybg1 NA coding upstream 213763 7434617 ~ 7545317 (-)
clic4 clic4,LOC107721318,LOC107659249 coding upstream 326598 7547452 ~ 7589335 (-)
G78568 NA non-coding downstream 270865 6927373 ~ 6928044 (-)
G78566 NA non-coding downstream 292045 6898752 ~ 6906864 (-)
G78563 NA non-coding downstream 308504 6890178 ~ 6890405 (-)
G78560 NA non-coding downstream 312337 6886105 ~ 6886572 (-)
G78492 NA non-coding downstream 360814 6836132 ~ 6838095 (-)
G78639 NA non-coding upstream 119825 7340679 ~ 7340982 (-)
G78638 NA non-coding upstream 122311 7343165 ~ 7346439 (-)
G78642 NA non-coding upstream 140920 7361774 ~ 7362155 (-)
G78643 NA non-coding upstream 141365 7362219 ~ 7362436 (-)
G78861 NA non-coding upstream 519162 7740016 ~ 7740593 (-)
G78297 kdm1a other downstream 2012551 5184792 ~ 5186358 (-)
G78083 NA other downstream 2992525 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3358339 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3484552 3645097 ~ 3714357 (-)
G77892 NA other downstream 3849920 3297582 ~ 3348989 (-)
LOC111193183 NA other upstream 1255543 8476397 ~ 8517648 (-)
spdya spdya other upstream 1411792 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1429774 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2813832 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 3073634 10294488 ~ 10336716 (-)

Expression


Co-expression Network