G78642


Basic Information

Item Value
gene id G78642
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7361774 ~ 7362155 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105993
GGTTTCTGGATCAGTCCAGGGAGATGAACAGCAGCAGCCAGCAGCGATGAGTCCTCCACTCCACCGTCTCTGCAACTCCGTCTGCAGTCCGACGTCTGGTCACTAGGTCCTCTATCACCACCACCAGGTCCTGGttccactctctccctctcgaaCCTGCGACACTTCACCACTACCAAACAATTGTACTGTGTTCTAATGTGTATCACTCAAAGAACCTAACCAAACTATCAGAAACCCCACTCCTGGTACCAATttttgtcaccggggaaaggacgcacaccaaatgacaaaatatgtttttttccgggtattttattctgatagaTTTTATTCAGAGCTTGTACTCAATTgtactcaaaataacaaaaataaaatgaat

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU105993 True 382 lncRNA 0.45 1 7361774 7362155

Neighbor

gene id symbol gene type direction distance location
iars2 iars2,LOC107654863,LOC107659255,LOC107582886,LOC107583609,LOC107715938 coding downstream 23995 7316546 ~ 7337779 (-)
LOC111193180 NA coding downstream 83990 7276400 ~ 7277784 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding downstream 168184 7091045 ~ 7193590 (-)
acss1 NA coding downstream 398346 6929770 ~ 6963428 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding downstream 437719 6894928 ~ 6924055 (-)
qrsl1 qrsl1,LOC107654864,LOC107716014,LOC107659251,LOC107583393 coding upstream 28381 7390536 ~ 7410350 (-)
crybg1 NA coding upstream 72462 7434617 ~ 7545317 (-)
clic4 clic4,LOC107721318,LOC107659249 coding upstream 185297 7547452 ~ 7589335 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding upstream 231484 7593639 ~ 7607630 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding upstream 247478 7609633 ~ 7624460 (-)
G78638 NA non-coding downstream 15335 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 20792 7340679 ~ 7340982 (-)
G78568 NA non-coding downstream 433730 6927373 ~ 6928044 (-)
G78566 NA non-coding downstream 454910 6898752 ~ 6906864 (-)
G78563 NA non-coding downstream 471369 6890178 ~ 6890405 (-)
G78643 NA non-coding upstream 64 7362219 ~ 7362436 (-)
G78861 NA non-coding upstream 377861 7740016 ~ 7740593 (-)
G78859 NA non-coding upstream 383148 7745303 ~ 7767327 (-)
G78871 NA non-coding upstream 400812 7762967 ~ 7765496 (-)
G78885 NA non-coding upstream 487598 7849753 ~ 7915212 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 140920 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2175416 5184792 ~ 5186358 (-)
G78083 NA other downstream 3155390 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3521204 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 3647417 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 1114242 8476397 ~ 8517648 (-)
spdya spdya other upstream 1270491 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1288473 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2672531 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2932333 10294488 ~ 10336716 (-)

Expression


Co-expression Network