G78859


Basic Information

Item Value
gene id G78859
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7745303 ~ 7767327 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106295
tgagtttaattcattttcttttacattttataaaaaaactaaaaaaaaagagtagcactttttgaaagaaatgtaacatattattaaatattaaccatgtgagctgtttatattgcttgcaatttaggtgaagcaagcatgtgtaaagcattttaatgtaaagttgcttaattttgctgaattaaatacaagtaacaaagtaaacgagtaacaaaaatatgaacaccacacaagggttaaaaacagTAGCGAAATAAAAGTAATACTATAGTAGATACAGAGATAGAATTTTGGTACTTAAGTGCAGCAGTGAAGTAGATCTACTTTGTTATTATACATGTCTAAATCAATGTGgacatttctttttatattgtaCCATTGGTTTaatcacattttgagaaagttaaatagatttatttattactcaTATTGTCTGTTCAATATGTAGAAAAAGCTGTTAGAAAGGCCGGTAAATTACGCGTGTGTTTCCAAAAAGCTACAAAACAGGGAGTTAGAAGTTTATATCACATGCATATGTGACTTTATTATAACATAGCAACATAGAAATCTGATTATTGCCTAAATTGTGAAAAAACTGGACATTTCTCTTTATCCCAAGTGCATCTAAAACCTgacaaaatcagattttctgcaGTTTTATTATATAGGATTATTGAGTACGTGCAAACACACTAACTGAATACTCAACAGCTCCCCCTTGTGGAGAATCTTCAGCCTGCTAAATATGAGTTAAGGCCAAGTCCATTACGATTTTTATCTGATTATTCTATATAATTCTATTCTGATGCACAGAATATTGAAACAGGGATCGTAACTCGAGCTGGGAGAGTTGATCACTTGAAGTGATGCATCACagaaaaatgttacattgtcTTCTTAATAGTTGCAGATGAGTATAAGTATGCCATGCCATTCCAAAAGCATGTTTTACTTTAAtgaactaaataattaattaattaatttgtggGAGTTTGTCGCACTCACACCTCTCTATCACAAACGTCCATCCGAAGAGTGTTTGTTTGATCGATTGTTTGATTACCAAAATCAGTTTTATTCCAATGTATGTTTTAAAGAACTTTGTTACTGATATTTGTTGATGTTTAATGCCAAGGAAAGTAACTAAACTGTTAGTTTTATCATTACTAATAATTTTATATCATAAATATTttcttaacattaacactgctgaaaatgttttattgttttaattttttgtgaCTTTTTGATACATTGTTTAATAATAAGGAAGACCTGTTTTAAAAGAGagactgtttttgtttttaaccaAGTATGCACCATGACTTTTATTATATCCTAAggattgttattattttattactaaaacTTTGTTGTTGCTAGGTTATACCAATAGGAtaaatcatagactgtatatagctggacagagcatcgtctctcaaaagtgaagccaccacaggtcgggcgccccctgctgttcggttgcagaaagctgtgtaaccc
>TU106296
cacacacacacacacaaccgaCACACACTTCAGCCTGCAGCGTGTCCGTACATACCGTCCGCCGGCTGCTGGAAGTTGACGTAGGCGTAGCCGAGCGAGCGGCGCGTGATCATGTCCCTGCACACGCGGATGGAGAGCACGGGGCCGGCCGGACTGAACTTCTCGTACAGCATGGCCTCCGTGATGTCCGGGTGGAGGTCTCCCACGTACAGCGAGGCCATCGGGTAGCTCCCCGCGGCGGCCGCGTTCATAGCGCGAGGTCCTCGGTGTCCGGCTGAAAACGGAGCGGCGGAGGAGCGCGAGGGTCcgggctgagtgtgtgtgtgtgtgtgttagtgagtgtgtgcgtgtagcagagggagagagagagggatagagctGTTTAGCCCGGCTCCGCTGCTGTTACCTGTGGTAAAGTTTCcgagctaataaaaaaaattataggtggtcctgaaaaaaaataaaaataataataataataataataataataaaaaacttagAATAATTAGTCCCGGAGCGCGCAGAGGCCTGTTCTGACtttgagagagaaaataaaacgcttggtagaaattaaaaaataaaaatgtgttgtttttttttctttttt

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106295 True 1503 lncRNA 0.31 2 7745303 7746850
TU106296 False 610 lncRNA 0.51 2 7758588 7767327

Neighbor

gene id symbol gene type direction distance location
LOC103025534 LOC108433315 coding downstream 95428 7629780 ~ 7649875 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding downstream 120843 7609633 ~ 7624460 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding downstream 137673 7593639 ~ 7607630 (-)
clic4 clic4,LOC107721318,LOC107659249 coding downstream 155968 7547452 ~ 7589335 (-)
crybg1 NA coding downstream 199986 7434617 ~ 7545317 (-)
kbtbd11 kbtbd11,LOC102794541 coding upstream 44543 7811870 ~ 7820202 (-)
arhgef10 arhgef10,LOC107721185,LOC107716000 coding upstream 58336 7825663 ~ 7925959 (-)
LOC111193126 NA coding upstream 163724 7931051 ~ 7967678 (-)
cln8 cln8 coding upstream 218834 7986161 ~ 7996819 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding upstream 241220 8008547 ~ 8222318 (-)
G78861 NA non-coding downstream 4710 7740016 ~ 7740593 (-)
G78643 NA non-coding downstream 382867 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 383148 7361774 ~ 7362155 (-)
G78638 NA non-coding downstream 398864 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 404321 7340679 ~ 7340982 (-)
G78885 NA non-coding upstream 82426 7849753 ~ 7915212 (-)
G78889 NA non-coding upstream 210473 7977800 ~ 7981423 (-)
G78891 NA non-coding upstream 214643 7981970 ~ 8040192 (-)
G78911 NA non-coding upstream 383128 8150455 ~ 8151276 (-)
G78940 NA non-coding upstream 524935 8292262 ~ 8294085 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 524449 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2558945 5184792 ~ 5186358 (-)
G78083 NA other downstream 3538919 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3904733 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4030946 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 709070 8476397 ~ 8517648 (-)
spdya spdya other upstream 865319 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 883301 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2267359 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2527161 10294488 ~ 10336716 (-)

Expression


Co-expression Network