G78861


Basic Information

Item Value
gene id G78861
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7740016 ~ 7740593 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106303
CAGTGAAGATCTAGATTTGGACTGGTCTCACCTTCCCTGGCTGTGTATTCATCGTTCTCAATGAGGCGAGCCAGGCCGAAGTCAGCGATCTTGCAGATGAGCGTGTCAGATACCAGGATGTTAGCGGCTCTCAGGTCTCGGTGGATGTAGTTCTTATGCTCAATGTAGGCCATTCCATCTGCCACCTACAGAGAGCAGCACTGCATTAGTAAtaaagcactgtgtgtgtgtgtgtgtGCTTGTCTATGCAGATAAAAGTATACAGGTGGTGGTTAGAAGTATTAGAAGTAGAGGtggttatactgtataataacttatttatttacttttggcattttaattttctccattgtagattaataccaaAATCACCCAAACTATGacgtcagctttatgaggtacagTCACCTGGGATTtcggttttcagttaacagctgtgctgaacttgtcaagagttaattacttgaatttcttgtctcttaatgtgtttgagagcatcagttgtaaagttgtgaagaggtacagttaaaggtatacagtgaataactctatataag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106303 True 557 lncRNA 0.41 2 7740016 7740593

Neighbor

gene id symbol gene type direction distance location
LOC103025534 LOC108433315 coding downstream 90141 7629780 ~ 7649875 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding downstream 115556 7609633 ~ 7624460 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding downstream 132386 7593639 ~ 7607630 (-)
clic4 clic4,LOC107721318,LOC107659249 coding downstream 150681 7547452 ~ 7589335 (-)
crybg1 NA coding downstream 194699 7434617 ~ 7545317 (-)
LOC111193181 NA coding upstream 6513 7747106 ~ 7758203 (-)
kbtbd11 kbtbd11,LOC102794541 coding upstream 71277 7811870 ~ 7820202 (-)
arhgef10 arhgef10,LOC107721185,LOC107716000 coding upstream 85070 7825663 ~ 7925959 (-)
LOC111193126 NA coding upstream 190458 7931051 ~ 7967678 (-)
cln8 cln8 coding upstream 245568 7986161 ~ 7996819 (-)
G78643 NA non-coding downstream 377580 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 377861 7361774 ~ 7362155 (-)
G78638 NA non-coding downstream 393577 7343165 ~ 7346439 (-)
G78639 NA non-coding downstream 399034 7340679 ~ 7340982 (-)
G78568 NA non-coding downstream 811972 6927373 ~ 6928044 (-)
G78859 NA non-coding upstream 4710 7745303 ~ 7767327 (-)
G78871 NA non-coding upstream 22374 7762967 ~ 7765496 (-)
G78885 NA non-coding upstream 109160 7849753 ~ 7915212 (-)
G78889 NA non-coding upstream 237207 7977800 ~ 7981423 (-)
G78891 NA non-coding upstream 241377 7981970 ~ 8040192 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 519162 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2553658 5184792 ~ 5186358 (-)
G78083 NA other downstream 3533632 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 3899446 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4025659 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 735804 8476397 ~ 8517648 (-)
spdya spdya other upstream 892053 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 910035 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2294093 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2553895 10294488 ~ 10336716 (-)

Expression


Co-expression Network