G78885


Basic Information

Item Value
gene id G78885
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7849753 ~ 7915212 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106333
agctcttttgctgttcagaggtgagtatatcagactgtggcctgcgtgtttactgtgttaaaacaagctacgtaggatGAACccctagctaatatcgccctggcttaccagaacctCAGGGTTCCTCgatgtagtgctgtcgggcttgcactagcggttagctgttAATGATAATGCTGTTATACCCAGCCTAAagggaaatctggaaatctaagtttactgtaaataaacagaagcgctttactcacccaaataaacagttttcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106333 True 267 lncRNA 0.44 2 7849753 7915212

Neighbor

gene id symbol gene type direction distance location
kbtbd11 kbtbd11,LOC102794541 coding downstream 29551 7811870 ~ 7820202 (-)
LOC111193181 NA coding downstream 91550 7747106 ~ 7758203 (-)
LOC103025534 LOC108433315 coding downstream 199878 7629780 ~ 7649875 (-)
LOC103026256 tdh2,LOC108433314,LOC107582959,LOC107583601,LOC105896089,LOC107721289,LOC107659247,LOC108269662 coding downstream 225293 7609633 ~ 7624460 (-)
srrm1 srrm1,LOC107659230,LOC107583602,LOC107721297 coding downstream 242123 7593639 ~ 7607630 (-)
LOC111193126 NA coding upstream 15839 7931051 ~ 7967678 (-)
cln8 cln8 coding upstream 70949 7986161 ~ 7996819 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding upstream 93335 8008547 ~ 8222318 (-)
zbtb8a zbtb8a coding upstream 604863 8520075 ~ 8527936 (-)
gale gale,LOC107721820,LOC107583591 coding upstream 614625 8529837 ~ 8549967 (-)
G78859 NA non-coding downstream 82426 7745303 ~ 7767327 (-)
G78871 NA non-coding downstream 84257 7762967 ~ 7765496 (-)
G78861 NA non-coding downstream 109160 7740016 ~ 7740593 (-)
G78643 NA non-coding downstream 487317 7362219 ~ 7362436 (-)
G78642 NA non-coding downstream 487598 7361774 ~ 7362155 (-)
G78889 NA non-coding upstream 62588 7977800 ~ 7981423 (-)
G78891 NA non-coding upstream 66758 7981970 ~ 8040192 (-)
G78911 NA non-coding upstream 235243 8150455 ~ 8151276 (-)
G78940 NA non-coding upstream 377050 8292262 ~ 8294085 (-)
LOC111193182 NA non-coding upstream 464277 8379489 ~ 8415110 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 628899 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2663395 5184792 ~ 5186358 (-)
G78083 NA other downstream 3643369 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4009183 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4135396 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 561185 8476397 ~ 8517648 (-)
spdya spdya other upstream 717434 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 735416 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 2119474 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2379276 10294488 ~ 10336716 (-)

Expression


Co-expression Network