G78891


Basic Information

Item Value
gene id G78891
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7981970 ~ 8040192 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106343
atggacttaggTTGTAGTAAAACAAGATAATGAGTATTAACATTtgtcgaatagcccacctcAAAACACTTCcaacattctgaaatacagtgcttttagttGATGCTcctaacaggcttacaatgctagtgataggggcatagcattgacCGTGCAAGAAAATTGCaataacaagctcaaagtagaaCTTCGAAActgcactgtttatacacacagtaccttcagctaGTTCTCCAGATGCCACCTTTTTGGCATTAAGGCACGATAAGTTCGCTGACGAGCACGATCAAGGAGGCACCTTGATCCACACCAAATAAAACACATGTCCAAAAGGCCTGATGTTATGGTGTTGGGTGCCATTTTGTATGGGGCCAGATCACTTTTGGTCTTAATGACCTTTTCTGACTGCCCATTCTGGTGTGTtgttccagcaggacaatgctcatccatatACTGCTGCCATGTCAAGAGCTTGTGATGggcagctgctgctgatgcaacatttaCGAGCAGCAttacagtgcgctcggaggaaagtgcagcgactcggttccgatacatcagctcacagatgccttgtgctgatccacatcaccctttagagtgatgaggtgagagagcgccatctacccacccagagagagcaaggcctattgtgctctctcaggactccggtagctgatggaaAGCAAGATAAATAGGGtttgaaccggcgatctcctaaACATAGTGGTAAATCAGTTCAATTTAACTTCTCAGTCCTAATGTATTGTTTACATCAAacttttcaaaattaaaaacaccGTATCtttagtatataaaaaaaacaaaatgagaaataaacctTTACTTGGTAtgactttacaataagggtcacaaataacagtatgTACGACAGTATTAAACACTGTTAAGAAGCTAAATAAGGTCTTCCCACTAGTTAAGAGGCTATTTAACATTACTACATTTaccttcttaaaaaaaagatgtaacTAATAATGTCTTACCCAGTGTCAGTAATTAGTTGTAATTAGTTGAGACGTTCTgtcgtaagtactgttaattaatgcacttttattttgaagtgttGCCTTTACATTTCACACAGTCAGTACTGTAGAATCTTATAACAGAGTGCATCActgtgcataaaaaaaaacaagtaaatgaaccactgtctgacaccagtCTTTACTGGTGTAAACTGGTTTTCCTTTatgatacattattaatatgggtatatttattgaaacatactgaattctaaaaagttactgcttcataactccacatggtggcgctaatcaaatgaatagggtaaacctgcagtgaagaatattggttgttaaattctgtgagactgacaccaataaatccataattcctggtatttacttatttaggagtattttatcctcttcagtaacacagatgctttGAAGTATCACAGAGAATTATCTTGCGATATAGAtcaagtatcacagaatcacagtatcacatCATCTTTATCACaggaaatgtattaaaaacattataatactgtatcatGAGATGCCCTGCGATTCCCACCAATactgatatattgatattgtcCTATACACCTACAACTGAGATAAagaaaaattgtgtaaattacatttttcctccaaactattcttgttttgtttgtttgtttgttaattgcATACTCgttttaaactctttaaaatcccTCTCCTCACAGTTTCTCAGTATTTGCAGGTTTTTGTCTCAGTCTTTGCAGTATATAAGAGTGAACCAACTGTGTTTTCTTCTAAAAGAAACTGAGACAAGTCCGCTGTAAGGACCTCACAGCACAGCGGTGGTTACGTTTCTTTTGAATGTGGCTTGAGGTTGATCTGCAGGCAGCCTTTCTTCTTCCTCTGCACTCAATCGCTAGTCATTCTCAGCCGGCATGATAGAAatacacctctggaaaaaaatgcgaccacttaaaaataaggaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106343 True 1985 lncRNA 0.38 2 7981970 8040192

Neighbor

gene id symbol gene type direction distance location
LOC111193126 NA coding downstream 14292 7931051 ~ 7967678 (-)
arhgef10 arhgef10,LOC107721185,LOC107716000 coding downstream 56011 7825663 ~ 7925959 (-)
kbtbd11 kbtbd11,LOC102794541 coding downstream 161768 7811870 ~ 7820202 (-)
LOC111193181 NA coding downstream 223767 7747106 ~ 7758203 (-)
LOC103025534 LOC108433315 coding downstream 332095 7629780 ~ 7649875 (-)
zbtb8a zbtb8a coding upstream 479883 8520075 ~ 8527936 (-)
gale gale,LOC107721820,LOC107583591 coding upstream 489645 8529837 ~ 8549967 (-)
LOC103047525 LOC108433331 coding upstream 535074 8575266 ~ 8580061 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding upstream 560890 8601082 ~ 8604516 (-)
wdr43 wdr43 coding upstream 567752 8607944 ~ 8622583 (-)
G78889 NA non-coding downstream 547 7977800 ~ 7981423 (-)
G78885 NA non-coding downstream 66758 7849753 ~ 7915212 (-)
G78859 NA non-coding downstream 214643 7745303 ~ 7767327 (-)
G78871 NA non-coding downstream 216474 7762967 ~ 7765496 (-)
G78861 NA non-coding downstream 241377 7740016 ~ 7740593 (-)
G78911 NA non-coding upstream 110263 8150455 ~ 8151276 (-)
G78940 NA non-coding upstream 252070 8292262 ~ 8294085 (-)
LOC111193182 NA non-coding upstream 339297 8379489 ~ 8415110 (-)
G78890 NA non-coding upstream 388326 8428518 ~ 8432284 (-)
G78978 NA non-coding upstream 495744 8535936 ~ 8537624 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 761116 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 2795612 5184792 ~ 5186358 (-)
G78083 NA other downstream 3775586 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4141400 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 4267613 3645097 ~ 3714357 (-)
LOC111193183 NA other upstream 436205 8476397 ~ 8517648 (-)
spdya spdya other upstream 592454 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 610436 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 1994494 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 2254296 10294488 ~ 10336716 (-)

Expression


Co-expression Network