G78983


Basic Information

Item Value
gene id G78983
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8562098 ~ 8563527 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106453
tTGATTTATCCATACATCCAACGGGCCAAATGTCTTTGGGCTGAATTATGATATAATGGTCACTGAATGTTTAGGTGTTTTATTGGGTTACGCGTAGTACTGCAAATGCAAATGTCGTGCTAAGGATTGTGGATCTTATTAACGCCTATTTTATGTTGGtttactagttttttttttttcaagttttcaagCCGATCTCTGCTCTGATTGCTGCTTTTAAATCAGAGATCACTTGCCGTGTTGTGTGAACTGCTAAAATACACTCACCAAGCTGAATCAAAGAAGCCAGGCAAAgatctagcaggtttaatatctagaCCAGTCAGTGACTGTGAGACAAGGGCAGTGACTACAAACAGTAAATAGGATCATGTAGAGAGAGGGAAGCATGGCATCAATAGTTTCTGTGTGCGTTTAGTTCCTGAGTGTTCACATCACAAAATGTGTTATTGAATTAAAAATCGTGTAACTAGTGACCTCGTGTTGACAAATACTTCACAACCAGCAATACAGTGTGAACAGAACAACGACCTGACTACtcaaagttgtgtagtgtgaaccaggGATAACTGGGTCATCCATCCCATCAACCAAACCCCTCTCACATCTGGGTTACATTGATTTTGAGATGCTTCTGTAGCTGACAGGCCCTGCTCCACATGTGCTGTGGGTGTTGTTTGAACCTTCCAGCTCCAAAGCTCAATATTTAACTTTCCAAGAAGCACTCGGGAGATTAGTCGGGAGGCTAAAATTGGCATGCGAGCCGTTTAGCCGGCGTGAAAACAAGGCACTAGAATAAAGGGGTTTCGATGCTTGCTTCTGTATCTTCACGAGAAACTCTCAGGCTCTTGTACACACGGGGCTTGTCAAGGCTGGGCGATTAAGACGAGAAACAGTCGTCATACACTCCGTCctgacaaacaaacagagatgaagagtgtgtgtgtgtctgtgtgtatatataattacaGGCTAATTCATCAGAAGGGCCTCCAGTGCCACTGTGCATTTAGGCTCCCATCCAAAAGCAAACAGTGGACCAGCTAATTCATACGTTCTTCCTGACTTCCTTCCATTATGAGAGGAGAAGGAAAGTCAGGAAAATCGTTCCACAGCCTTCAGAACAAAGCACACAGTGCTGCATCCGTGCCTTAGCAGTGTCTCAGAAGGCCCATCAGCCATGTCTGGGCTTCCTTTGCCATAAAgcaaagagacagagagcgagagaaatgCACATGCCCATAGGAAACCAACAGGAGACatagtgagaaagaaagagagtcaaacacaaacacacccaatTTGTATTGCAAATCACAGTTTACAGGCGGCTTGTGCGACTTTGGAACTCGTCCTTCTGTTGAGGGAACGGCAGATATACGAGCCGGCATCCATCAGCTTGTGTAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106453 True 1409 lncRNA 0.44 2 8562098 8563527

Neighbor

gene id symbol gene type direction distance location
gale gale,LOC107721820,LOC107583591 coding downstream 12131 8529837 ~ 8549967 (-)
zbtb8a zbtb8a coding downstream 34162 8520075 ~ 8527936 (-)
dlgap2 dlgap2,LOC107583594,LOC107654879,LOC107715999,LOC107721130,LOC107583025 coding downstream 339780 8008547 ~ 8222318 (-)
cln8 cln8 coding downstream 565279 7986161 ~ 7996819 (-)
LOC111193126 NA coding downstream 594420 7931051 ~ 7967678 (-)
LOC103047525 LOC108433331 coding upstream 11739 8575266 ~ 8580061 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding upstream 37555 8601082 ~ 8604516 (-)
wdr43 wdr43 coding upstream 44417 8607944 ~ 8622583 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding upstream 205135 8768662 ~ 9026556 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding upstream 492541 9056068 ~ 9177695 (-)
G78978 NA non-coding downstream 24474 8535936 ~ 8537624 (-)
G78890 NA non-coding downstream 129814 8428518 ~ 8432284 (-)
LOC111193182 NA non-coding downstream 146988 8379489 ~ 8415110 (-)
G78940 NA non-coding downstream 268013 8292262 ~ 8294085 (-)
G78911 NA non-coding downstream 410822 8150455 ~ 8151276 (-)
G78986 NA non-coding upstream 17056 8580583 ~ 8580826 (-)
G79039 NA non-coding upstream 796051 9359578 ~ 9359810 (-)
G79064 NA non-coding upstream 1032485 9596012 ~ 9596425 (-)
G79067 NA non-coding upstream 1050196 9613723 ~ 9613985 (-)
G79080 NA non-coding upstream 1083156 9646683 ~ 9647063 (-)
LOC111193183 NA other downstream 44450 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 1341244 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 3375740 5184792 ~ 5186358 (-)
G78083 NA other downstream 4355714 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 4721528 3834562 ~ 3840570 (-)
spdya spdya other upstream 69119 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 87101 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 1471159 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 1730961 10294488 ~ 10336716 (-)
G79582 NA other upstream 2365113 10928640 ~ 10929596 (-)

Expression


Co-expression Network