LOC111193186 (ttc27,LOC107689788,LOC107670805)


Basic Information

Item Value
gene id LOC111193186
gene name ttc27,LOC107689788,LOC107670805
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9713040 ~ 9716352 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106605
cagtctctATCAGCTGTAGCAGAGAGAAGACTAATCCTCAGGAGGCCTTGCAGATGTTGTCCTCAGCGCGGCTCAGTCTGAAGAGTCTGGCCACCAAATCAAAACAACTCTACACTGACGTCTCTACTGGAAATCTTCCTGAAGACCTTAGAGATGATGTGACAGAACTGGAACGACTTATCACAGAGCTCCAAGACCTGAGCGCTCAGCTgcgcagccaatcagaatagcCGTTTCACTACACACAGACCTTATCTTCATCCAGCCTGTTGTATTATAATGCTGTGCCTTTTATCAACACACAACTTCATATTGATTAAGCCTGGTTATGGAATAAACTATGTTTCTACTGATGTTTTATCATGATTTTATTGTCAGCATAGAAAAGAGCTGGAAGTATGATTAATGTTAACGTGTGATTAACATGAACATTAGATACATTCCCTGCCCATTTTTTCAGCTCTACTAAACATATACgaaggaggaggtggagaaataTAGTCCTTCTGAGTGTGCTGCTCCTAGAGTGgacagtgtttaagaactccagcagcactgcagtgtctgatccactcgtaccagaACAATACACACTAATAGCTGCTCTTAGGAGGTCTCTCCTGTAGGGTCCTAACCATTAAAA
>XR_002650311.1
ttctccctcctctcccCCTGCTCTTTCTTGCtgtctgtaacacacactctctctctctctctctctctctctctctctctctctctcacagtctctATCAGCTGTAGCAGAGAGAAGACTAATCCTCAGGAGGCCTTGCAGATGTTGTCCTCAGCGCGGCTCAGTCTGAAGAGTCTGGCCACCAAATCAAAACAACTCTACACTGACGTCTCTACTGGAAATCTTCCTGAAGACCTTAGAGATGATGTGACAGAACTGGAACGACTTATCACAGAGCTCCAAGACCTGAGCGCTCAGCTgcgcagccaatcagaatagcCGTTTCACTACACACAGACCTTATCTTCATCCAGCCTGTTGTATTATAATGCTGTGCCTTTTATCAACACACAACTTCATATTGATTAAGCCTGGTTATGGAATAAACTATGTTTCTACTGATGTTTTATCATGATTTTATTGTCAGCATAGAAAAGAGCTTAATCTGTGAATTGAACCAGCTGGAAGTATGATTAATGTTAACGTGTGATTAACATGAACATTAGATACATTCCCTGCCCATTTTTTCAGCTCTACTAAACATATACgaaggaggaggtggagaaataTAGTCCTTCTGAGTGTGCTGCTCCTAGAGTGgacagtgtttaagaactccagcagcactgcagtgtctgatccactcgtaccagaACAATACACACTAATAGCTGCTCTTAGGAGGTCTCTCCTGTAGGGTCCTAACCATTAAAACAGGACTATAATATTCCTGGCTGGACTGTGTATAATTAACAGACAAATAGTGTTGAGCTCAGTACAAAGGTCTAAAATATCATTAATTACATACATAAATTGCTGCTGTGAAGCAAAAAGCTTGTATTT

Function

symbol description
ttc27 Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and pectoral fin bud. Orthologous to human TTC27 (tetratricopeptide repeat domain 27).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106605 False 643 lncRNA 0.43 3 9713169 9716264
XR_002650311.1 True 882 lncRNA 0.42 2 9713040 9716352

Neighbor

gene id symbol gene type direction distance location
LOC103043477 esrrg,LOC107582200,LOC107733169 coding downstream 535345 9056068 ~ 9177695 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding downstream 686484 8768662 ~ 9026556 (-)
wdr43 wdr43 coding downstream 1090457 8607944 ~ 8622583 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding downstream 1108524 8601082 ~ 8604516 (-)
LOC103047525 LOC108433331 coding downstream 1132979 8575266 ~ 8580061 (-)
LOC111193187 NA coding upstream 121626 9837978 ~ 9838726 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding upstream 231160 9947512 ~ 10023607 (-)
LOC111193127 NA coding upstream 323989 10040341 ~ 10041065 (-)
id3 id3 coding upstream 367856 10084208 ~ 10087040 (-)
msra msra,si:ch1073-358c10.1 coding upstream 417630 10133982 ~ 10171770 (-)
G79080 NA non-coding downstream 65977 9646683 ~ 9647063 (-)
G79067 NA non-coding downstream 99055 9613723 ~ 9613985 (-)
G79064 NA non-coding downstream 116615 9596012 ~ 9596425 (-)
G79039 NA non-coding downstream 353230 9359578 ~ 9359810 (-)
G78986 NA non-coding downstream 1132214 8580583 ~ 8580826 (-)
G79222 greb1,LOC107594824 non-coding upstream 85176 9801528 ~ 9807931 (-)
LOC111193188 NA non-coding upstream 161967 9878319 ~ 9930504 (-)
G79251 NA non-coding upstream 183192 9899544 ~ 9900956 (-)
G79266 NA non-coding upstream 221839 9938191 ~ 9940933 (-)
G79268 NA non-coding upstream 281596 9997948 ~ 9998575 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1058023 8650628 ~ 8655017 (-)
spdya spdya other downstream 1071208 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1195392 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 2492186 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 4526682 5184792 ~ 5186358 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 318334 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 578136 10294488 ~ 10336716 (-)
G79582 NA other upstream 1212288 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 1225335 10941687 ~ 11183941 (-)
G79865 NA other upstream 2253089 11969441 ~ 11971939 (-)

Expression


Co-expression Network