LOC111193188


Basic Information

Item Value
gene id LOC111193188
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9878319 ~ 9930504 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106782
cttctttcatttaaattacatctcagtcataatatatgtacatcccctagctactctgtaaaacgttcaattacgccttttacagcccaacaatttacaggtAAGCTTCCTGATTTATCAACTCTAATATATTCTCctatagacccagtagaactagacaaactaaccgaaggtttagaaaatacctttcgctctaccttagatgttgtagctccccttaaacataaaatagagagacagaaaaagctcgcaccgtggtacaatgatcaaactcgtaccttaaagcagttagtacgaaatttagagcgtaaatatcgatcaactaaactggaagtgtttcactctgcgtggaaagacagtcttgttaaatatagaaaagaactaaataaagcccgctcagcgtatctggcctcacagatcgagataaataaaaataatcctagagttctctttagtgttatttccaaattaactaaaaaccaggcaggtactgaacctcagattccagccatttacaccagcaacgattttatggacttcttcaatagtaaaattgaaaacattcgggataaaattaaacagataaatattacatcctctctgtcatctggtctggctgatctagaacaaaaccctgttactgaagttaggttggaagtctttaacccacttccacagctagaactagagaaaatgatctcctcttcaaacagcacaACCTGCACAC
>XR_002650313.1
ctttgtgttggtttattacaatttcaataaaatacaggtgacaaaatgtggaaaagttctgCAAATTACTGAACTAAGGATGCTTTCTTATCTACCTTTTGGATTTTTTGTTTGGTCCAAATcaaaatagcaggtgtaaaagttgccacaaaaaaacatggacCCGTTTGTCTGCAGTATGAAACACTTTTAAGATGGTTCAGAGATTTAGAccaattttactgtaagcagaACAAGACCTCAGGTTGTGATTCATCAATCATCACTGACCTCGCGTGTAAACCTGGCACCCAAAGAGGCAAAAGCTTGTGTCAGTAAAGCTGCTGACTGCAGGACATATCTGAACAGGCATCTGAACTCAAGCCTAAACAAAGTGAATTGACTGCTTTTTCTGTGGCaggtatatccagattagttttaatatTAGCTGCAGCAAAAACCTGctgcaaaaacttaaaaaacaaaaaaaaatcctgcacagagaggggaggggcttccccccACCAGCAAACTGACTGTCCTCCGCTcaccgcaaaaccagcaagctgattggctgtttctcctgaaaggcggaacgTTCCCCTGATCCGGCTCCATGATTGGCGATAAGAGATTCCTCGTTCACACAGCGATCAGTgacctgtctcctcattaatagcaAAGCTGAGCTGAGGGAATcgatatcatttttgtaggGGGACCAATTTCCTACGCCAATGGCCATTAGGCACATTCATGATGTTGTCTCAGATAactgtgtgttgtggtgtgtgctTTTGTCTGTTGAAATAAACAATGAACTACAGTAACCTCACATGCTCAAATGGGAAATAAGGTCTTATTCTGTGTGTGCGCACGCGCACGTGTGTGTGCGCGTAGTCTTGCTTATGCTGTTGGACGTGTTGAACTACGTTTTGAAGAAGTGGAATTTTTTCCTGGAAAAGAGGCCtgatgagtgtatgtgtgtgtgttttggaacTAGCGAGGTTGATTATATCTCTCAAACAATAACAATTTCATCACCATCTGTCCAGTTGACTTAGCGAGGCCCCGAGTTCCTCAGTAAATCCGTCTTGATCTTCCTCTGATTCCATGATTCCATCGTCTGTTGGCTGCAGCTCCTTTCTGTAATCCAGGCCTTTGGTGTTGAGAGCGTGTTCTTGGAATGGAGTCCAGAACCGAAATGTGAGAAGATCTTGCAGGGGATCCTTGGACAGCAAAGCACTTTGGCTCCTGCTCACAGCCTTATGATATGACTGTAccacagtggtgtgcagtgaggccctatatattatagttattgtaaactataagcaaGTATTTTATAAAGTAcctaaaaaaactaatacaaagcattagtctgtgtttttcagttgctacaggactcttatctgactgaccgctgttctaaccaatcaaagctttttaaaatggcttctgcccacATGTTTGCGTGACCCTTCTACTGATTTTGAGAAGGATGTAGTAATGAGTATATTAGCAAAGtcgcaggacaatctaaccaatcagatcatgATGGCGGGGCCATGACTGTCTTACTGTCTTTAttaaagaacttaataaagcaaagaacttaataaagcccgctcagcgtatctggcctcacagatcgagataaataaaaat
>XR_002650314.1
cagctctgactttggttgtggcgggtagaatctcaaacaggaaacaggaaatagtCCGTAGGGTAGACTGTCCTATTTCAGTACTGCCATCGCAGCCTACCCATCCTTCGAAGGACACACCTTCATAGACCgcgtccttcgaaggatgcagaccctgaattgagacacagccCAAGACTTTCAGAAAGGCCCCGAGTTCCTCAGTAAATCCGTCTTGATCTTCCTCTGATTCCATGATTCCATCGTCTGTTGGCTGCAGCTCCTTTCTGTAATCCAGGCCTTTGGTGTTGAGAGCGTGTTCTTGGAATGGAGTCCAGAACCGAAATGTGAGAAGATCTTGCAGGGGATCCTTGGACAGCAAAGCACTTTGGCTCCTGCTCACAGCCTTATGATATGACTGTAccacagtggtgtgcagtgaggccctatatattatagttattgtaaactataagcaaGTATTTTATAAAGTAcctaaaaaaactaatacaaagcattagtctgtgtttttcagttgctacaggactcttatctgactgaccgctgttctaaccaatcaaagctttttaaaatggcttctgcccacATGTTTGCGTGACCCTTCTACTGATTTTGAGAAGGATGTAGTAATGAGTATATTAGCAAAGtcgcaggacaatctaaccaatcagatcatgATGGCGGGGCCATGACTGTCTTACTGTCTTTAttaaagaacttaataaagcaaagaacttaataaagcccgctcagcgtatctggcctcacagatcgagataaataaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106782 False 727 lncRNA 0.37 3 9878319 9930504
XR_002650313.1 True 1647 lncRNA 0.42 3 9882476 9889203
XR_002650314.1 False 788 lncRNA 0.44 3 9882476 9893647

Neighbor

gene id symbol gene type direction distance location
LOC111193187 NA coding downstream 39593 9837978 ~ 9838726 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding downstream 700624 9056068 ~ 9177695 (-)
ush2a ush2a,LOC108444108,LOC108414482 coding downstream 851763 8768662 ~ 9026556 (-)
wdr43 wdr43 coding downstream 1255736 8607944 ~ 8622583 (-)
LOC103047224 LOC103047224,LOC108433332,LOC107583588 coding downstream 1273803 8601082 ~ 8604516 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding upstream 17008 9947512 ~ 10023607 (-)
LOC111193127 NA coding upstream 109837 10040341 ~ 10041065 (-)
id3 id3 coding upstream 153704 10084208 ~ 10087040 (-)
msra msra,si:ch1073-358c10.1 coding upstream 203478 10133982 ~ 10171770 (-)
ythdf2 ythdf2,LOC107721611,LOC107654833,LOC107697702 coding upstream 274631 10205135 ~ 10222403 (-)
G79222 greb1,LOC107594824 non-coding downstream 70388 9801528 ~ 9807931 (-)
LOC111193186 ttc27,LOC107689788,LOC107670805 non-coding downstream 161967 9713040 ~ 9716352 (-)
G79080 NA non-coding downstream 231256 9646683 ~ 9647063 (-)
G79067 NA non-coding downstream 264334 9613723 ~ 9613985 (-)
G79064 NA non-coding downstream 281894 9596012 ~ 9596425 (-)
G79266 NA non-coding upstream 7687 9938191 ~ 9940933 (-)
G79268 NA non-coding upstream 67444 9997948 ~ 9998575 (-)
G79269 NA non-coding upstream 68391 9998895 ~ 10000818 (-)
G79285 NA non-coding upstream 171032 10101536 ~ 10101746 (-)
G79288 NA non-coding upstream 174919 10105423 ~ 10105681 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1223302 8650628 ~ 8655017 (-)
spdya spdya other downstream 1236487 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1360671 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 2657465 7198909 ~ 7220854 (-)
G78297 kdm1a other downstream 4691961 5184792 ~ 5186358 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 104182 10034686 ~ 10071884 (-)
LOC103027264 NA other upstream 363984 10294488 ~ 10336716 (-)
G79582 NA other upstream 998136 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 1011183 10941687 ~ 11183941 (-)
G79865 NA other upstream 2038937 11969441 ~ 11971939 (-)

Expression


Co-expression Network