G79290


Basic Information

Item Value
gene id G79290
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10108804 ~ 10114162 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106841
ggagcactgacttgagatttgcgtggttgaaatctccggcgataataaacagtccgtctgggtgtttgttttgcagatcgctgatagtccgatagagttcacacagagccttttttagcattagcaccaatgctagcgctgggtggaatgtagacagcagctattagcacggcggagaactcccgtactaaataaaaaggtctgcacttgactatcaggaactccacctaATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCATCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCATCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCTGCACAACCACAACTCTACTTAATACAACAGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCTACTTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTAC
>TU106848
AACTGAAGCTCCTTCCTGCACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCTACTTAATACAACtgaagctccatccagtacAACCACAACTCCATCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCATCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCTGCACAACCACAACTCTACTTAATACAACAGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCTGCACAACCACAACTCCATCTAATACAACTGAAGCTCCTTCCAGTACAACCACAACTCCACCTAATACAACTGAAGCTCCTTCCAGTACAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106841 True 633 lncRNA 0.45 2 10111222 10112567
TU106848 False 446 lncRNA 0.44 3 10108804 10114162

Neighbor

gene id symbol gene type direction distance location
id3 id3 coding downstream 21764 10084208 ~ 10087040 (-)
LOC111193127 NA coding downstream 67739 10040341 ~ 10041065 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding downstream 85197 9947512 ~ 10023607 (-)
LOC111193187 NA coding downstream 270078 9837978 ~ 9838726 (-)
LOC103043477 esrrg,LOC107582200,LOC107733169 coding downstream 931109 9056068 ~ 9177695 (-)
msra msra,si:ch1073-358c10.1 coding upstream 19820 10133982 ~ 10171770 (-)
ythdf2 ythdf2,LOC107721611,LOC107654833,LOC107697702 coding upstream 90973 10205135 ~ 10222403 (-)
LOC103026970 NA coding upstream 314223 10428385 ~ 10475469 (-)
LOC103026375 ankrd1,LOC107583650 coding upstream 363500 10477662 ~ 10488854 (-)
LOC103025430 NA coding upstream 523686 10637848 ~ 10640240 (-)
G79288 NA non-coding downstream 3123 10105423 ~ 10105681 (-)
G79285 NA non-coding downstream 7058 10101536 ~ 10101746 (-)
G79269 NA non-coding downstream 107986 9998895 ~ 10000818 (-)
G79268 NA non-coding downstream 110229 9997948 ~ 9998575 (-)
G79266 NA non-coding downstream 167871 9938191 ~ 9940933 (-)
LOC111193189 NA non-coding upstream 23821 10137983 ~ 10141355 (-)
G79347 NA non-coding upstream 145440 10259602 ~ 10259882 (-)
G79357 NA non-coding upstream 186907 10301069 ~ 10301293 (-)
G79515 NA non-coding upstream 392185 10506347 ~ 10557458 (-)
G79514 NA non-coding upstream 402764 10516926 ~ 10556868 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 36920 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1453787 8650628 ~ 8655017 (-)
spdya spdya other downstream 1466972 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1591156 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 2887950 7198909 ~ 7220854 (-)
LOC103027264 NA other upstream 180326 10294488 ~ 10336716 (-)
G79582 NA other upstream 814478 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 827525 10941687 ~ 11183941 (-)
G79865 NA other upstream 1855279 11969441 ~ 11971939 (-)
G79945 NA other upstream 2043424 12157586 ~ 12192028 (-)

Expression


Co-expression Network