LOC103027264


Basic Information

Item Value
gene id LOC103027264
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10294488 ~ 10336716 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106930
aaaaagaaaaattacatgAATAGTCAGTATAAAAGAATTAGGTGCTGATCCTGGATGGTGGGCAGTTCATCAAAACTCCCGTCTTGCTTTTCTCAGTCCAGTAATGTGCTCCTTCTTAAAGTCTATGAATTGGGCAGAATGTCTGACCTCTCACTGAGAGTCTCTTTTTACAAGGCAGCAGGGGAAGCTGAAAGGGatattacactacactaaacaTGCTCTGTTTTGTTGCAGCTGGGGAGGTAAGTGGGGGGAAAGGGGCTACATGAGGATATCCAGGAACAAGAAGAACCGGTGCGGCATTGCCACAAGACCCGTCTACCCTCTTGTTTAAAGcAGATGGGAGAAAAGGCCAAAGCACCGATGATCATCTCTGGGAGAAATATCCCAAGCAAcagaagcagcaaaaaaaaaaaaaaaaaaaagcatgcatttgctattttacattatacttttatcttttttcttcttctttgtctttttgCAAGAAACCATTTAGTACTTGCTTTTTTGTAATACAGTTGTATATGCTGTACATGAAACTGttc
>TU106932
TTTTATGCTGAAAGTTTATTATAGTTAAAGTTTGGATACaacacttttacatttattttaaaagagagAGGATGGTGGTCTCTGGTGGTCTagctaatactgctgctttCTCTCAACAGCTGATCATAGAGAAAGAATTACGTAAAAGCAGgacattaaagaaaaaagatatagtataaaatagcatattttttttgctgcttctgctgcatgGGATATGATCATTGTGGTAAGACTGAAGCCTCTTTCCAGAGATGTTCATCACTGCTTCGGCTTTTTCTTTAATCTTAAACAATAGGGAAGACGGGTCTTGTGGCAATGCCGCACTGGTTCCTCTGGTTCCTGGACATCCTAATGTAGCCGTTTTCACCCCACCTAGTTCCCCAGCTGCTGTTCTTCACCAGCCAATAACGCCTGCTTCCTCCTGCTCTGCCATAACCAATCAGCAGGACGGCGTGGTTCATGCGATGGTTACTGCAGCGGCGATCGTTATACACACCTGACTTGTAGAGCCTGAAGGAGCGTCTGGAGGAGTCTACAGATACTGAAATCGGTCCGATTTTGGCCACAGCAAACTTCAGTATTTTCTCATTTCCTCTGGGCAAGCACACTATGCCGCGGCAGGTAGCCCTAACCTTCCATGGATTAAAGTGGCATCTTCTGAGGTCTGGAGGCAGGATACAGCTATCCCTATAAGGCCCGGAGGTCCAGAAGATGCCACTTTGATCAAAGGAAGGTTAGGGCTACCTGCCATGGCGTAGTGTGCTTGCCCAGAGGAAATGAAAGAGCACTGAAGTATGCTGTGGCCAAAGTTGGACCGATTTCAGTATCTGTAGACGCCTCCAGACGCTCCTTCAGGCTCTACAAGTCAGGTCAGCTGCAGCAacactttcttttttactcATCACTAGGACTGGGGTGACTGGTCAGTGTAATCAGCATCAATTATAAAAATACTTGCATTTGCATAATGTGGCTTTGTA
>TU106933
TTTTATGCTGAAAGTTTATTATAGTTAAAGTTTGGATACaacacttttacatttattttaaaagagagAGGATGGTGGTCTCTGGTGGTCTagctaatactgctgctttCTCTCAACAGCTGATCATAGAGAAAGAATTACGTAAAAGCAGgacattaaagaaaaaagatatagtataaaatagcatattttttttgctgcttctgctgcatgGGATATGATCATTGTGGTAAGACTGAAGCCTCTTTCCAGAGATGTTCATCACTGCTTCGGCTTTTTCTTTAATCTTAAACAATAGGGAAGACGGGTCTTGTGGCAATGCCGCACTGGTTCCTCTGGTTCCTGGACATCCTAATGTAGCCGTTTTCACCCCACCTAGTTCCCCAGCTGCAACAAAACAGAGCATGTTTAGTTTAGTATAATCAGAACACTGTCTTCTGAATGAATTCTAATGTCTATTTCAGCTTTccctgctgccttaaaaagtCTCTCAGAGGTTACTTTTGTGTAGTTTTTCTTTCAGTGAGAGATCaatgactgctagacatgcctctatgtCACATTTGAAGGCATTCTGCCCAGTGTACAGACCAGTCTACAGCACATTACTGGATTGAGAAGCAGGATGGGAGTTTTTATGAATTGCCCACCATTAAGGAATATTTTGAGCACCTAATTGTTTCTAtaattactatatat
>XM_022672472.1
AATcagttttctcattttattgttGCATAAAAAGGGATTTTTTGTGATTAAGAAATAAACAGGGTGGAGCTTCATTCTATATAAACCTGCACACTTTGTGACAGTCACACAGGCAGGTCTTCAGGACTCCAGGAGATCAGTCAGAATGAGGGTGCTACTCGCTGTCGCCGCACTTGTGGTCGTGGTTGGTGCAGCCAGTGTCTCAATGGAGGACCAGGAGTTTGAATCCTGGAAACAGGAGCATGGTAAGAGTTACAGTTCTGAGGAAGAGGAGTCTCAGCGTAAGATGAGCTGGCTGACCAGTCGTAATCTGGTTCTGGAGCACAACAAGCTGGCTGACCAGGGCCTTGAAAGCTACACACTCGAAATGAACGAGTTTGCAGACATGGAAGACCAGGAGTTCCAGGACTTGTACAGTGGCAGCCTGGATTGCAGCAACAACACTGAGACTGAATCTCTCTGTACGTCTACATTCACCACAGAGAGCATAGATGATGATCTGCCCTGCAGAGTGGACTGGAGGGAGAAGGGCTATGTGACGGGTGTTAAGATGCAGAGGGGCTGTAGCTCCAGCTGGGCCTTCAGTGCGACGGGGGCGCTCGAGGGTCAGTGGTTCAAGAAGACAAGAAAGCTGATTTGGCTGAGTGAGCAACAGCTGATCGACTGCGCTGGGAGATATGGAAACCATGGCTGTTTCGGCGGTTTGGCAGTCCGGGCCTTTAGGTACACCATGCACAGAGGTCTGGAGGCAGGATACAGCTATCCCTATAAGGCCCGGAGGTCCAGAAGATGCCACTTTGATCAAAGGAAGGTTAGGGCTACCTGCCATGGCGTAGTGTGCTTGCCCAGAGGAAATGAAAGAGCACTGAAGTATGCTGTGGCCAAAGTTGGACCGATTTCAGTATCTGTAGACGCCTCCAGACGCTCCTTCAGGCTCTACAAGTCAGGTCAGCTGCACTGGGGAGGTAAGTGGGGGGAAAGGGGCTACATGAGGATATCCAGGAACAAGAAGAACCGGTGCGGCATTGCCACAAGACCCGTCTACCCTCTTGTTTAAAGcAGATGGGAGAAAAGGCCAAAGCACCGATGATCATCTCTGGGAGAAATATCCCAAGCAAcagaagcagcaaaaaaaaaaaaaaaaaaaagcatgcatttgctattttacattatacttttatcttttttcttcttctttgtctttttgCAAGAAACCATTTAGTACTTGCTTTTTTGTAATACAGTTGTATATGCTGTACATGAAACTGttcctgaaataaactaacagtttttttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106930 False 548 lncRNA 0.40 2 10294514 10295224
TU106932 False 983 lncRNA 0.45 6 10304393 10336716
TU106933 False 699 lncRNA 0.38 2 10335810 10336716
XM_022672472.1 True 1297 mRNA 0.48 8 10294488 10307595

Neighbor

gene id symbol gene type direction distance location
ythdf2 ythdf2,LOC107721611,LOC107654833,LOC107697702 coding downstream 72085 10205135 ~ 10222403 (-)
msra msra,si:ch1073-358c10.1 coding downstream 122718 10133982 ~ 10171770 (-)
id3 id3 coding downstream 207448 10084208 ~ 10087040 (-)
LOC111193127 NA coding downstream 253423 10040341 ~ 10041065 (-)
LOC103045212 LOC108441044,LOC108269989,LOC107594821,LOC107719497,LOC107590922,LOC107733139 coding downstream 270881 9947512 ~ 10023607 (-)
LOC103026970 NA coding upstream 91669 10428385 ~ 10475469 (-)
LOC103026375 ankrd1,LOC107583650 coding upstream 140946 10477662 ~ 10488854 (-)
LOC103025430 NA coding upstream 301132 10637848 ~ 10640240 (-)
fgfbp3 NA coding upstream 344440 10681156 ~ 10684935 (-)
LOC103026670 LOC103026670,LOC108430189 coding upstream 378651 10715367 ~ 10717840 (-)
G79347 NA non-coding downstream 34606 10259602 ~ 10259882 (-)
LOC111193189 NA non-coding downstream 153133 10137983 ~ 10141355 (-)
G79290 NA non-coding downstream 180326 10108804 ~ 10114162 (-)
G79288 NA non-coding downstream 188807 10105423 ~ 10105681 (-)
G79285 NA non-coding downstream 192742 10101536 ~ 10101746 (-)
G79515 NA non-coding upstream 169631 10506347 ~ 10557458 (-)
G79514 NA non-coding upstream 180210 10516926 ~ 10556868 (-)
G79533 NA non-coding upstream 297784 10634500 ~ 10635093 (-)
G79602 NA non-coding upstream 874335 11211051 ~ 11217908 (-)
LOC111193138 NA non-coding upstream 1035363 11372079 ~ 11375380 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 222604 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 1639471 8650628 ~ 8655017 (-)
spdya spdya other downstream 1652656 8632646 ~ 8641832 (-)
LOC111193183 NA other downstream 1776840 8476397 ~ 8517648 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other downstream 3073634 7198909 ~ 7220854 (-)
G79582 NA other upstream 591924 10928640 ~ 10929596 (-)
ltbp1 ltbp1 other upstream 604971 10941687 ~ 11183941 (-)
G79865 NA other upstream 1632725 11969441 ~ 11971939 (-)
G79945 NA other upstream 1820870 12157586 ~ 12192028 (-)
ncmap NA other upstream 1997683 12334399 ~ 12372804 (-)

Expression


Co-expression Network