G79786


Basic Information

Item Value
gene id G79786
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11665136 ~ 11669405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107482
aaagtcttttgttccacTGACACACtgcgaaagtcttttgttccacggacaaactccgaaagtcttttgttccacggacaaactccgaaagtcttttgttccacGGACAAACTctgaaagtcttttgttccaaTGACtaactccgaaagtcttttgttccacAGACAAACTCCAAAAGTCTTTTGTTCCACTGAAACTCtgcgaaagtcttttgttccacTGACACACtgcgaaagtcttttgtcccacGGACAAattccgaaagtcttttgttacacagacagactccgaaagtcttttgttccacGGACAGACTCCGGAAATCTTTTGTT
>TU107483
cgaaagtcttttgttccacTGACACACtgcgaaagtcttttgttccacTGACACACtgcgaaagtcttttgttccacGGACAAACTCCGAAAGTCTCTTGTTCCACTGACACACtgcgaaagtcttttgttccacggacaaactccgaaagtcttttgttccacggacaaactccgaaagtcttttgttccacggacaaactccgaaagtcttttgttccaaggacaaactccgaaagtcttttgttccacGGACAAACTctgaaagtcttttgttccaaTGACtaactccgaaagtcttttgttccacAGACAAACTCCAAAAGTCTTTTGTTCCACTGAAACTCtgcgaaagtcttttgttccacTGACACACtgcgaaagtcttttgtcccacGGACAAattccgaaagtcttttgttacacagacagactccgaaagtcttttgttccacGGACAGACTCCGGAAATCTTTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107482 False 332 lncRNA 0.42 2 11665136 11667824
TU107483 True 479 lncRNA 0.43 3 11665136 11669405

Neighbor

gene id symbol gene type direction distance location
ttc27 ttc27,LOC107689788 coding downstream 301928 11220363 ~ 11363208 (-)
LOC111193129 NA coding downstream 456452 11205127 ~ 11208684 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 728873 10822882 ~ 10936263 (-)
LOC103040295 LOC108430229 coding downstream 866334 10790644 ~ 10798802 (-)
LOC103026670 LOC103026670,LOC108430189 coding downstream 947296 10715367 ~ 10717840 (-)
rlf NA coding upstream 456422 12125827 ~ 12150716 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 850058 12519463 ~ 12524837 (-)
LOC103024740 LOC103024740,LOC108413681 coding upstream 1061221 12730626 ~ 12735104 (-)
LOC103046657 NA coding upstream 1152510 12821915 ~ 12835548 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding upstream 1252355 12921760 ~ 12950947 (-)
G79664 NA non-coding downstream 101281 11563514 ~ 11563855 (-)
G79658 NA non-coding downstream 106334 11556965 ~ 11558802 (-)
G79657 NA non-coding downstream 108180 11556595 ~ 11556956 (-)
G79644 NA non-coding downstream 128792 11535793 ~ 11536344 (-)
G79642 NA non-coding downstream 129738 11533578 ~ 11535398 (-)
G79789 NA non-coding upstream 4585 11673990 ~ 11674965 (-)
G79790 NA non-coding upstream 17457 11686862 ~ 11687670 (-)
G79791 NA non-coding upstream 30660 11700065 ~ 11700309 (-)
G79792 NA non-coding upstream 32186 11701591 ~ 11704092 (-)
G79796 NA non-coding upstream 77097 11746502 ~ 11749563 (-)
ltbp1 ltbp1 other downstream 481195 10941687 ~ 11183941 (-)
G79582 NA other downstream 735540 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 1328420 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 1593252 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 3010119 8650628 ~ 8655017 (-)
G79865 NA other upstream 300036 11969441 ~ 11971939 (-)
G79945 NA other upstream 488181 12157586 ~ 12192028 (-)
ncmap NA other upstream 664994 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 915757 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 1202584 12871989 ~ 12912395 (-)

Expression


Co-expression Network