XLOC_007276 (smyd5)


Basic Information

Item Value
gene id XLOC_007276
gene name smyd5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 22498757 ~ 22523799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014360
CACCATTTACGTTTACAGCAGGCAGCACGGATAATCACTCCCAGAATGAGAATAAATCTCTCAGTACTCAGGcgaatgttaaaaaaagaaaggcgATCTCTCTCTCGCACACTCATTGGTCAGGTTGAGAGGTTAGAGGTTAAAATGTTAATATCCAACATGGCGGCCCCCGTAGATGACATGTTTTCTCGCTGCGTGGATTCTGCCAAAGCAAGTAATTGCGTGGATGTCCGATTTATCAATAATGTCAAGggcAAAGGATTATTCGCTAAAAAACCTTTCAAAAAAGGAGACACTATTTTTATTGAACGACCTCTAGTCTCCTCTCAGTTCTTGTGGAATGCCTTGTACAAATACAGAGCATGTGAATACTGTCTGCGTGCTCTGGAGACTGCAGAAGAGAATGCCAGAAGGTTGAGTGGTCTGCCAGCTCTCATCTTACCCCATCCTGAGTTATGTAAGGTGCGACCTGATAGACACCAGGCCTGTCCACAATGTCAGGTGATGTACTGTAGTTCTGAGTGCCGACAGGCTGCAATGGATCAGTACCATAAAATTCTATGTCTTGGCCCATCCAATGATGATCCTGATCATCCGGTCAACAAGCTGCAGGATGCGTGGAGGAGTGTACACTTCCCTCCCGAAACCTCCAGTGTCATGATACTGGCAAAGATGGTGGCCACAATCAAgcagACTCAAGATAAGGAACGCTGGCAGAGGTTGTTTACTAATTTCTGTAGCCGAACAGCAAACGAGGAGGAGGAAATAGTTCATAAATTACTGGGAGAGAAGTTTCAGggaCAGTTGGGTTTGCTGCGTAATCTGTTTACCACAGCATTGTATGAAGATCGTCTTAGTCAgTGGTTCACTCCAGAGGGATTTCGCTCTCTCTTTTCACTTGTTGGGACCAACGGTCAGGGTATCGGCACCAGTTCTCTGAGTCAGTGGGTTCATGCCTGTGATGCGCTGGAGCTTCCCCGCCAGCAGAGGGAGCAACTGGATGCGTTTATCGACCAGCTTTACAAGGACATCGACAAAGAAACCGGCGATTTCCTCAACTGTGAAGGCTCTGGTCTTTTCCTCCTGCAAAGCTCCTGTAACCACAGCTGCGTTCCCAATGCGGAGGCTTCGTTTCCAGAAAACAACTTCCTCCTTCACCTCACGGCCCTCGGTGACATCGGCCCTGGAGAGgaAATTTGCATCAGCTACCTGGACTGCTGTCAGCGAGACAGGAGTCGTCATAGCCGGCACAAGATCTTGAGggaaaattatttattcatctgttcCTGTCAGAAGTGCTTGTCCCAGATGGACGATGCGGATATGACATCAGAAGATGAGGAGGAAGTAGAAGGAGAGGGAGAAACAGAAGGAGAAGACATGGAGGATGAAATGACCGATGTGTAATCTGGTTTCCCTTCTTACCCAAACCACGCCACTTGTTTGTGGACCTCTACAAAGTGATCCCTGAAACCCACCACGGGGTGTAATACCCATAGCAGTTGAGACTCACAGTAGCACTACAGTTGTTTGGCCGTTATATAACCTTCATATCAAAGCCTATGCAAAATATAAGTGCAGTATTTTTA
>TCONS_00014361
AATATCCAACATGGCGGCCCCCGTAGATGACATGTTTTCTCGCTGCGTGGATTCTGCCAAAGCAAGTAATTGCGTGGATGTCCGATTTATCAATAATGTCAAGggcAAAGGATTATTCGCTAAAAAACCTTTCAAAAAAGGAGACACTATTTTTATTGAACGACCTCTAGTCTCCTCTCAGTTCTTGTGGAATGCCTTGTACAAATACAGAGCATGTGAATACTGTCTGCGTGCTCTGGAGACTGCAGAAGAGAATGCCAGAAGGTTGAGTGGTCTGCCAGCTCTCATCTTACCCCATCCTGAGTTATGTAAGGTGCGACCTGATAGACACCAGGCCTGTCCACAATGTCAGGTACGTTTGATTTAATATATTCCCAGGTTAGC

Function

symbol description
smyd5 Acts upstream of or within definitive hemopoiesis; negative regulation of myeloid cell differentiation; and primitive hemopoiesis. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human SMYD5 (SMYD family member 5).

GO:

id name namespace
GO:0060215 primitive hemopoiesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0045638 negative regulation of myeloid cell differentiation biological_process
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040912-39 Acts upstream of or within definitive hemopoiesis; negative regulation of myeloid cell differentiation; and primitive hemopoiesis. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human SMYD5 (SMYD family member 5).

Ensembl:

ensembl_id ENSDARG00000071669

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014360 False 1589 mRNA 0.47 13 22498757 22523799
TCONS_00014361 True 384 lncRNA 0.45 3 22498906 22506744

Neighbor

gene id symbol gene type direction distance location
XLOC_007275 nudt22 coding upstream 19277 22467672 ~ 22479480 (+)
XLOC_007274 gdf9 coding upstream 34574 22457230 ~ 22464183 (+)
XLOC_007273 sowahab coding upstream 43872 22447662 ~ 22454885 (+)
XLOC_007272 atp7a coding upstream 55255 22397251 ~ 22443502 (+)
XLOC_007271 atp10b coding upstream 130836 22293787 ~ 22367921 (+)
XLOC_007277 gfra4b coding downstream 67825 22591624 ~ 22708777 (+)
XLOC_007278 BX005043.2 coding downstream 283699 22807498 ~ 22811997 (+)
XLOC_007279 NA coding downstream 317358 22841157 ~ 22959220 (+)
XLOC_007280 enox2 coding downstream 552328 23076127 ~ 23479577 (+)
XLOC_007281 si:ch211-221f10.2 coding downstream 994311 23518110 ~ 23591678 (+)
XLOC_007268 NA non-coding upstream 358544 22129096 ~ 22140213 (+)
XLOC_007259 NA non-coding upstream 720921 21777557 ~ 21777836 (+)
XLOC_007255 ndufs8b non-coding upstream 819840 21671107 ~ 21678917 (+)
XLOC_007254 NA non-coding upstream 1205259 21293114 ~ 21293498 (+)
XLOC_007241 NA non-coding upstream 1653717 20841544 ~ 20845040 (+)
XLOC_007293 NA non-coding downstream 1707112 24230911 ~ 24234703 (+)
XLOC_007298 BX005228.1 non-coding downstream 1833601 24357400 ~ 24357517 (+)
XLOC_007300 NA non-coding downstream 2353303 24877102 ~ 24878581 (+)

Expression


Co-expression Network