LOC103024242 (LOC108430197)


Basic Information

Item Value
gene id LOC103024242
gene name LOC108430197
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6689304 ~ 6707961 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230052.3
AAGAGTGAGAGCAAGTCAGTCAGATACTGCAGACTGAACAGACGCACCTGCAGCTCTGTTACTTTCACAGCGGCAGCACATAACAGACAGGGCGAGCATGGCAGCGGCAACGGCGCAGACAATGGGGAGCCTGCCCAGCGGGGTGGGGATCTGCACCACCGCCCCAGACATCTTCTACCTGCCGGAGCTGgtgtTTGGTGGCTTGGTATGGATCTTGGTAGCCTCCTCTCACGTGAAGCCGGAGAACCCGCAGGGCTGGGTGATGTTTGTGTCCATTTTCTGCTTCGTCATGACCTTCCTCTGGCTCCTCATCTTTGTCTCTGGAGGACACAAGAACCACAGCAACTGGGCCACAGCGgacTTTGTGTATCACCTGCTGGCGGCTCTTTTCTACCTCAGTGCCTCCGTCCCCCTCGGCACAGTAACTATCTACATAAAGAACACCACCCTAATCGCAGAACCTGACCGCTTCAGATACTACCGGATCGACATTGCAGCAGTGGTTTTCTCTTACGTGGCCACACTGCTGTACTTCATTCACTGCATCCTGTCTGCAGTCCGATGGAAAAACTTCTGAGCGatagaagacaaaaaaagaaaagagaaaaaacaatcCACCAAAAAATCAGCGCAATTAACCACAAGGGAAAAGACGAGGCAGCGAGCCGGACAGAGGGAACAAAGAAGGATTATTCCTAAAGGGGTCATCACTGAAGAGTCGATTCCCTTTCTCTACCATCACTGCCCAGATACAAAGTTTATTCATATATCAATCACGTACGAGATCTTCTACAGATCAAAACCTGATTATAAAAGGACTAATAACTTCCCTTTCTAATTCTAAATCAGCCTGAATTCTGTACATTTGTGCAAATCAAAGCTTTTGAAATGTgtctttttataaaatgttaaaatgtaagcTAGTAATTCCAGTcaatcaaccttttttttttgtacgttCAAGGTATCGCCCTCTATTTCACGAGGAGCACGTTTTAATAAAAGCTGTGCAAACTTAA
>XM_022672638.1
attctgtgtgtatgtatgtgtgtgttgcaggtgtTTGGTGGCTTGGTATGGATCTTGGTAGCCTCCTCTCACGTGAAGCCGGAGAACCCGCAGGGCTGGGTGATGTTTGTGTCCATTTTCTGCTTCGTCATGACCTTCCTCTGGCTCCTCATCTTTGTCTCTGGAGGACACAAGAACCACAGCAACTGGGCCACAGCGgacTTTGTGTATCACCTGCTGGCGGCTCTTTTCTACCTCAGTGCCTCCGTCCCCCTCGGCACAGTAACTATCTACATAAAGAACACCACCCTAATCGCAGAACCTGACCGCTTCAGATACTACCGGATCGACATTGCAGCAGTGGTTTTCTCTTACGTGGCCACACTGCTGTACTTCATTCACTGCATCCTGTCTGCAGTCCGATGGAAAAACTTCTGAGCGatagaagacaaaaaaagaaaagagaaaaaacaatcCACCAAAAAATCAGCGCAATTAACCACAAGGGAAAAGACGAGGCAGCGAGCCGGACAGAGGGAACAAAGAAGGATTATTCCTAAAGGGGTCATCACTGAAGAGTCGATTCCCTTTCTCTACCATCACTGCCCAGATACAAAGTTTATTCATATATCAATCACGTACGAGATCTTCTACAGATCAAAACCTGATTATAAAAGGACTAATAACTTCCCTTTCTAATTCTAAATCAGCCTGAATTCTGTACATTTGTGCAAATCAAAGCTTTTGAAATGTgtctttttataaaatgttaaaatgtaagcTAGTAATTCCAGTcaatcaaccttttttttttgtacgttCAAGGTATCGCCCTCTATTTCACGAGGAGCACGTTTTAATAAAAGCTGTGCAAACTTAA

Function

NR:

description
PREDICTED: myelin and lymphocyte protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230052.3 True 1019 mRNA 0.47 4 6689304 6707961
XM_022672638.1 False 859 mRNA 0.44 3 6689304 6695275

Neighbor

gene id symbol gene type direction distance location
luzp1 luzp1 coding downstream 1426308 5210729 ~ 5262996 (-)
togaram1 NA coding downstream 2010894 4666571 ~ 4678410 (-)
fancm NA coding downstream 2023817 4624101 ~ 4665487 (-)
slc25a47 NA coding downstream 2072510 4613712 ~ 4616794 (-)
wdr25 wdr25 coding downstream 2090404 4591368 ~ 4598900 (-)
LOC103024548 NA coding upstream 5495 6713456 ~ 6722276 (-)
nphp1 nphp1 coding upstream 41157 6749118 ~ 6768199 (-)
LOC103025187 crip3,LOC107583529,LOC107744353,LOC107553273,LOC107717123,LOC107663266 coding upstream 186967 6894928 ~ 6924055 (-)
acss1 NA coding upstream 221809 6929770 ~ 6963428 (-)
LOC103026718 kcnh1a,LOC108433307,LOC107721370,LOC107659257 coding upstream 383084 7091045 ~ 7193590 (-)
G78435 mrps5 non-coding downstream 6209 6629689 ~ 6683095 (-)
G78442 NA non-coding downstream 15033 6673803 ~ 6674271 (-)
G78436 NA non-coding downstream 45617 6642636 ~ 6643687 (-)
G78433 NA non-coding downstream 61573 6624701 ~ 6627731 (-)
G78406 NA non-coding downstream 70752 6618151 ~ 6618552 (-)
G78447 NA non-coding upstream 570 6708531 ~ 6708831 (-)
G78448 NA non-coding upstream 1278 6709239 ~ 6710108 (-)
G78453 NA non-coding upstream 18685 6726646 ~ 6726854 (-)
G78455 NA non-coding upstream 21878 6729839 ~ 6730061 (-)
G78463 NA non-coding upstream 37004 6744965 ~ 6745556 (-)
G78297 kdm1a other downstream 1502946 5184792 ~ 5186358 (-)
G78083 NA other downstream 2482920 4045434 ~ 4206384 (-)
G78023 scfd1 other downstream 2848734 3834562 ~ 3840570 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other downstream 2974947 3645097 ~ 3714357 (-)
G77892 NA other downstream 3340315 3297582 ~ 3348989 (-)
LOC111193177 kcnh1,LOC108433307,LOC106904951,LOC103476431,LOC102309410,LOC103370850,LOC103137420,LOC101155792 other upstream 490948 7198909 ~ 7220854 (-)
LOC111193183 NA other upstream 1768436 8476397 ~ 8517648 (-)
spdya spdya other upstream 1924685 8632646 ~ 8641832 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other upstream 1942667 8650628 ~ 8655017 (-)
LOC103027354 LOC103027354,LOC108438753 other upstream 3326725 10034686 ~ 10071884 (-)

Expression


Co-expression Network